Table 3 Genome statistics
Attribute | MEX1 | MEX9 | MEX25 | MEX29 | MEX30 | MEX31 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Value | % | Value | % | Value | % | Value | % | Value | % | Value | % | |
Genome size (bp) | 2,337,090 | 100.0 | 2,337,578 | 100.0 | 2,337,529 | 100.0 | 2,337,866 | 100.0 | 2,368,140 | 100.0 | 2,367,880 | 100.0 |
DNA coding (bp) | 2,012,758 | 86.12 | 2,017,915 | 86.33 | 2008,915 | 85.94 | 2025,972 | 86.66 | 1,966,942 | 83.06 | 2,051,473 | 86.64 |
DNA G + C (bp) | 1,219,520 | 52.18 | 1,219,842 | 52.18 | 1,219,763 | 52.18 | 1,219,957 | 52.18 | 1,234,064 | 52.11 | 1,233,547 | 52.10 |
DNA scaffolds | 1 | 100.0 | 1 | 100.0 | 1 | 100.0 | 1 | 100.0 | 1 | 100.0 | 1 | 100.0 |
Total genes | 2145 | 100.0 | 2146 | 100.0 | 2143 | 100.0 | 2145 | 100.0 | 2188 | 100.0 | 2182 | 100.0 |
Protein coding genes | 2021 | 94.22 | 2025 | 94.36 | 2016 | 94.07 | 2032 | 94.73 | 2008 | 91.77 | 2058 | 94.32 |
RNA genes | 64 | 2.98 | 64 | 2.98 | 64 | 2.99 | 64 | 2.98 | 66 | 3.02 | 63 | 2.89 |
Pseudo genes | 60 | 2.80 | 57 | 2.66 | 63 | 2.94 | 49 | 2.28 | 114 | 5.21 | 61 | 2.80 |
Genes in internal clusters | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
Genes with function prediction | 1579 | 73.61 | 1576 | 73.44 | 1583 | 73.87 | 1578 | 73.57 | 1605 | 73.36 | 1610 | 73.79 |
Genes assigned to COGs | 2007 | 93.57 | 2013 | 93.80 | 2009 | 93.75 | 2020 | 94.17 | 1998 | 91.32 | 2046 | 93.77 |
Genes with Pfam domains | 1679 | 78.28 | 1675 | 78.05 | 1670 | 77.93 | 1690 | 78.79 | 1664 | 76.05 | 1731 | 79.33 |
Genes with signal peptides | 157 | 7.32 | 151 | 7.04 | 159 | 7.42 | 155 | 7.23 | 144 | 6.58 | 153 | 7.01 |
Genes with transmembrane helices | 595 | 27.74 | 591 | 27.54 | 585 | 27.30 | 601 | 28.02 | 585 | 26.74 | 596 | 27.31 |
CRISPR repeats | 0 | 00 0 | 1 | 0.05 | 1 | 0.05 | 1 | 0.05 | 4 | 0.18 | 4 | 0.18 |