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Table 3 Genome statistics

From: First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico

Attribute MEX1 MEX9 MEX25 MEX29 MEX30 MEX31
Value % Value % Value % Value % Value % Value %
Genome size (bp) 2,337,090 100.0 2,337,578 100.0 2,337,529 100.0 2,337,866 100.0 2,368,140 100.0 2,367,880 100.0
DNA coding (bp) 2,012,758 86.12 2,017,915 86.33 2008,915 85.94 2025,972 86.66 1,966,942 83.06 2,051,473 86.64
DNA G + C (bp) 1,219,520 52.18 1,219,842 52.18 1,219,763 52.18 1,219,957 52.18 1,234,064 52.11 1,233,547 52.10
DNA scaffolds 1 100.0 1 100.0 1 100.0 1 100.0 1 100.0 1 100.0
Total genes 2145 100.0 2146 100.0 2143 100.0 2145 100.0 2188 100.0 2182 100.0
Protein coding genes 2021 94.22 2025 94.36 2016 94.07 2032 94.73 2008 91.77 2058 94.32
RNA genes 64 2.98 64 2.98 64 2.99 64 2.98 66 3.02 63 2.89
Pseudo genes 60 2.80 57 2.66 63 2.94 49 2.28 114 5.21 61 2.80
Genes in internal clusters NA NA NA NA NA NA NA NA NA NA NA NA
Genes with function prediction 1579 73.61 1576 73.44 1583 73.87 1578 73.57 1605 73.36 1610 73.79
Genes assigned to COGs 2007 93.57 2013 93.80 2009 93.75 2020 94.17 1998 91.32 2046 93.77
Genes with Pfam domains 1679 78.28 1675 78.05 1670 77.93 1690 78.79 1664 76.05 1731 79.33
Genes with signal peptides 157 7.32 151 7.04 159 7.42 155 7.23 144 6.58 153 7.01
Genes with transmembrane helices 595 27.74 591 27.54 585 27.30 601 28.02 585 26.74 596 27.31
CRISPR repeats 0 00 0 1 0.05 1 0.05 1 0.05 4 0.18 4 0.18