First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico

Parise, Doglas; Parise, Mariana T D; Viana, Marcus V C; Muñoz-Bucio, Adrian V; Cortés-Pérez, Yazmin A; Arellano-Reynoso, Beatriz; Díaz-Aparicio, Efrén; Dorella, Fernanda A; Pereira, Felipe L; Carvalho, Alex F; Figueiredo, Henrique C P; Ghosh, Preetam; Barh, Debmalya; Gomide, Anne C P; Azevedo, Vasco A C

doi:10.1186/s40793-018-0325-z

Environmental Microbiome

Table 1 Classification and general features of Corynebacterium strains MEX1, MEX9, MEX25, MEX29, MEX30, and MEX31 according to the MIGS recommendations [41]

From: First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico

MIGS ID	Property	Term	Evidence code^a
	Classification	Domain Bacteria	TAS [23]
		Phylum Actinobacteria	TAS [24]
		Class Actinobacteria	TAS [25]
		Order Actinomycetales Suborder Corynebacterineae	TAS [25,26,27,28]
		Family Corynebacteriaceae	TAS [25, 28]
		Genus Corynebacterium	TAS [29, 30]
		Species Corynebacterium pseudotuberculosis	TAS [26, 29]
		strain: MEX1 (Accession NZ_CP017711.1) MEX9 (Accession NZ_CP014543.1), MEX25 (Accession NZ_CP013697.1), MEX29 (Accession NZ_CP016826.1), MEX30 (Accession NZ_CP017291.1), MEX31 (Accession NZ_CP017292.1)
	Gram stain	Positive	TAS [31]
	Cell shape	Pleomorphic	TAS [31]
	Motility	Non-motile	TAS [31, 35]
	Sporulation	non-sporulating	TAS [31]
	Temperature range	Mesophilic	TAS [32, 35]
	Optimum temperature	37 °C	TAS [32, 73]
	pH range; Optimum	7.0–7.2	TAS [4, 35]
	Carbon source	Glucose, fructose, maltose, mannose, and sucrose	TAS [11, 15]
MIGS-6	Habitat	Host and soil	TAS [25, 33, 34]
MIGS-6.3	Salinity	Up to 2 M NaCl	TAS [32]
MIGS-22	Oxygen requirement	Aerobic and facultative anaerobic	TAS [4, 35, 73]
MIGS-15	Biotic relationship	Facultative intracellular pathogen	TAS [4, 31]
MIGS-14	Pathogenicity	Sheep, goats, horses, cattle, camel, buffalo, rarely humans	TAS [4, 37, 74]
MIGS-4	Geographic location	MEX1 – Ixtenco, Tlaxcala, Mexico MEX9 – Salamanca, Guanajuato, Mexico MEX25 – Celaya, Guanajuato, Mexico MEX29 - Río Frio, Estado de Mexico, Mexico MEX30 and MEX31 – Valparaiso, Zacatecas, Mexico	TAS [19]
MIGS-5	Sample collection	MEX1–2014, MEX9 and MEX25 –2012, MEX29 , MEX30 and MEX31 –2013	TAS [19]
MIGS-4.1	Latitude	MEX1 – 19 ^o 15’11” MEX9–20 ^o 34’26” MEX25 –20 ^o 55’1” MEX29 –19 ^o 21’8” MEX30 and MEX31 –22 ^o 46’16”	IDA
MIGS-4.2	Longitude	MEX1 – 97 ^o 53’45” MEX9 - 101 ^o 11’45” MEX25 - 101 ^o 9’42” MEX29 - 98 ^o 40’17” MEX30 and MEX31 –103 ^o 34’11”	IDA
MIGS-4.4	Altitude	MEX1–8236 ft MEX9–5623 ft MEX25 –6502 ft MEX29 –9770 ft MEX30 and MEX31 –6221 ft	IDA

^aEvidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [75]

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ISSN: 2524-6372

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