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Table 4 Number of genes associated with general COGs functional categories

From: Complete genome sequence of the halophile bacterium Kushneria konosiri X49T, isolated from salt-fermented Konosirus punctatus

Code Value %age Description
J 222 6.81% Translation, ribosomal structure and biogenesis
A 1 0.03% RNA processing and modification
K 179 5.49% Transcription
L 112 3.43% Replication, recombination and repair
B 1 0.03% Chromatin structure and dynamics
D 32 0.98% Cell cycle control, cell division, chromosome partitioning
V 54 1.66% Defense mechanisms
T 134 4.11% Signal transduction mechanisms
M 195 5.98% Cell wall/membrane/envelope biogenesis
N 80 2.45% Cell motility
U 35 1.07% Intracellular trafficking, secretion, and vesicular transport
O 108 3.31% Posttranslational modification, protein turnover, chaperones
C 197 6.04% Energy production and conversion
G 216 6.62% Carbohydrate transport and metabolism
E 264 8.10% Amino acid transport and metabolism
F 84 2.58% Nucleotide transport and metabolism
H 179 5.49% Coenzyme transport and metabolism
I 108 3.31% Lipid transport and metabolism
P 174 5.34% Inorganic ion transport and metabolism
Q 73 2.24% Secondary metabolites biosynthesis, transport and catabolism
R 268 8.22% General function prediction only
S 138 4.23% Function unknown
ā€“ 779 23.89% Not in COGs
  1. The total is based on the total number of protein coding genes (3261) in the genome