Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 6,125,776 | 100.00 |
DNA coding (bp) | 5,469,601 | 89.29 |
DNA G + C (bp) | 4,094,621 | 66.84 |
DNA scaffolds | 42 | 100.00 |
Total genes | 5727 | 100.00 |
Protein coding genes | 5665 | 98.92 |
RNA genes | 62 | 1.08 |
Pseudo genes | 0 | 0 |
Genes in internal clusters | ||
Genes with function prediction | 4740 | 82.77 |
Genes assigned to COGs | 4193 | 73.21 |
Genes with Pfam domains | 4837 | 84.46 |
Genes with signal peptides | 635 | 11.09 |
Genes with transmembrane helices | 1391 | 24.29 |
CRISPR repeats | 0 | 0 |