Table 3 Genome statistics
From: Draft genome sequence of Fermentimonas caenicola strain SIT8, isolated from the human gut
Attribute | Strain SIT8 | Strain ING2-E5BT | ||
|---|---|---|---|---|
Value | % of total | Value | % of total | |
Genome size (bp) | 2,824,451 | 100% | 2,808,926 | 100% |
DNA coding (bp) | 2,599,342 | 92.03% | 2,582,364 | 91.93% |
DNA G + C (bp) | 1,045,046 | 37% | 1,047,729 | 37.3% |
DNA scaffolds | 2 | 1 | ||
Total genes | 2400 | 100% | 2455 | 100% |
Protein coding genes | 2354 | 98.08% | 2405 | 97.96% |
RNA genes | 46 | 1.92% | 50 | 2.04% |
Genes with function prediction | 1668 | 69.5% | 1758 | 71.61% |
Genes assigned to COGs | 1693 | 70.54% | 1705 | 69.45% |
Genes with Pfam domains | 2221 | 92,54% | 2184 | 88.96% |
Genes with signal peptides | 657 | 27.37% | 502 | 20.44% |
Genes with transmembrane helices | 437 | 18.21% | 539 | 21.96% |
ORFans genes | 28 | 1.17% | 22 | 0.89% |
CRISPR repeats | 0 | 1 | ||