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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants

Code Value %age Description
J 189 3.96 Translation, ribosomal structure and biogenesis
A 1 0.02 RNA processing and modification
K 368 7.71 Transcription
L 216 4.53 Replication, recombination and repair
B 2 0.04 Chromatin structure and dynamics
D 43 0.90 Cell cycle control, Cell division, chromosome partitioning
V 59 1.24 Defense mechanisms
T 425 8.90 Signal transduction mechanisms
M 232 4.86 Cell wall/membrane biogenesis
N 133 2.79 Cell motility
U 107 2.24 Intracellular trafficking and secretion
O 176 3.69 Posttranslational modification, protein turnover, chaperones
C 285 5.97 Energy production and conversion
G 196 4.11 Carbohydrate transport and metabolism
E 433 9.07 Amino acid transport and metabolism
F 88 1.84 Nucleotide transport and metabolism
H 179 3.75 Coenzyme transport and metabolism
I 189 3.96 Lipid transport and metabolism
P 256 5.36 Inorganic ion transport and metabolism
Q 118 2.47 Secondary metabolites biosynthesis, transport and catabolism
R 574 12.03 General function prediction only
S 423 8.86 Function unknown
846 17.72 Not in COGs
  1. The total is based on the total number of protein coding genes in the genome