Table 3 Genome statistics
Attribute | Value | % of Totala |
|---|---|---|
Genome size (bp) | 3,974,949 | 100.00 |
DNA coding (bp) | 3,051,435 | 76.76 |
DNA G + C (bp) | 1,939,775 | 48.80 |
DNA scaffolds | 40 | 100.00 |
Total genesb | 3941 | 100.00 |
Protein coding genes | 3866 | 98.09 |
RNA genesc | 75 | 1.91 |
Pseudo genesd | n.d. | n.d. |
Genes in internal clusters | 2118 | 54.78 |
Genes with function prediction | 2468 | 63.38 |
Genes assigned to COGs | 1803 | 46.63 |
Genes with Pfam domains | 2634 | 68.13 |
Genes with signal peptides | 292 | 7.55 |
Genes with transmembrane helices | 880 | 22.33 |
CRISPR repeats | 0 | 0.00 |