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Table 3 Genome statistics

From: Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile

Attribute Value % of Totala
Genome size (bp) 3,974,949 100.00
DNA coding (bp) 3,051,435 76.76
DNA G + C (bp) 1,939,775 48.80
DNA scaffolds 40 100.00
Total genesb 3941 100.00
Protein coding genes 3866 98.09
RNA genesc 75 1.91
Pseudo genesd n.d. n.d.
Genes in internal clusters 2118 54.78
Genes with function prediction 2468 63.38
Genes assigned to COGs 1803 46.63
Genes with Pfam domains 2634 68.13
Genes with signal peptides 292 7.55
Genes with transmembrane helices 880 22.33
CRISPR repeats 0 0.00
  1. aThe total is based on either the size of the genome in base pairs or the total number of genes in the annotated genome
  2. bIncludes tRNA, tmRNA, rRNA
  3. cIncludes 23S, 16S and 5S rRNA
  4. dn.d.: Not determined