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Table 6 Analysis of polymorphic genes that differentiate biovar 4 from other genomes

From: The draft genome of Brucella abortus strain Ba col-B012, isolated from a dairy farm in Nariño, Colombia, bring new insights into the epidemiology of biovar 4 strains

Set Annotation Type Description
0 The major facilitator superfamily (MFS) is a class of membrane transport proteins Syn T-G (pos 87)|
1 Hypothetical protein Syn T-G (pos 283)
2 Multiple antibiotic resistance transporter NonSyn C-T (pos 424), P-S (pos 142)
3 Calcium/calmodulin dependent protein kinase II Syn C-A (pos 95)
4 Peptidase Do Syn C-A(pos 829)
5 30S ribosomal protein S14 Syn C-A(pos 124)
6 Hypothetical protein NonSyn G-T (pos 186), Q-H (pos 62)
7 Excinuclease ABC subunit B Stop STOP codon
8 Hypothetical protein similar with BA14K family domain In/Del IN/DEL 12 nuc (pos 327)
9 Flagellar basal body rod protein FlgC NonSyn G-A (pos 55), A-T (pos 19)
10 Dipeptide ABC transporter permease DppC NonSyn T-C (pos 478), S-P (pos 160)
11 Na(+)/H(+) antiporter NhaA Stop IN/DEL-ORF G?- (pos 1917)
12 Hypothetical protein Syn G-A (pos 609), C-T (pos 633)
13 DNA-3-methyladenine glycosylase Syn C-T (pos 483)
14 Mannosyltransferase NonSyn A-C(pos 980), K-N (pos 349)
15 Hypothetical protein NonSyn C-T(pos 229), T-I (pos75)
16 Class II fumarate hydratase NonSyn C-T(pos 1323), A-V (pos 441)
17 Hypothetical protein Syn G-C(pos 250)
18 Acyl carrier protein Syn C-T (pos 260)
19 Tyrosine--tRNA ligase Syn C-G(pos1107)
20 Glycosyl transferase NonSyn C-T(pos 35), V-A(pos12)
21 D-alanyl-D-alanine carboxypeptidase NonSyn A-G(pos 451), T-A (pos 151)
22 Malic enzyme Syn T-C (pos723)
23 X-Pro dipeptidase   T-C(pos 280), F-L (pos 94)
24 Putative multidrug efflux transporter protein Stop G-T(pos 229), E-STOP
25 D-ribose ABC transporter substrate-binding protein NonSyn C-T(pos 396), A-V(pos 132)
26 NAD-dependent dehydratase NonSyn A-G(pos196), M-V (pos 66)
27 Phosphogluconate dehydratase NonSyn C-T(pos620), A-V(pos 207)
28 Hypothetical protein Syn C-T (pos628)
29 Hypothetical protein NonSyn A-G(pos235), T-A (pos 79)
30 Glutamine synthetase Syn G-A(pos 1306)
31 N-formylglutamate amidohydrolase Syn A-G (pos 541)
32 Hypothetical protein NonSyn A-T(pos 36), K-M(pos12)
33 Branched-chain amino acid ABC transporter, ATP-binding/permease protein NonSyn A-G(pos452), N-S(pos 151)
34 DNA topoisomerase NonSyn C-A(pos 1827),
  R-S(pos 609)
35 Aspartate carbamoyltransferase Syn A-G(pos 540)
36 8-amino-7-oxononanoate synthase NonSyn A-G(pos 991), R-G(pos 331)
37 Secretion protein HlyD family protein-hemolysin secretion protein D NonSyn G-A(pos 415), V-I(pos 139)
38 Tetracycline resistance protein TetB NonSyn T-G(pos 765), F-L(pos 225)
39 Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase NonSyn G-T(pos 590), F-C(pos 197)
40 ABC transporter permease In/Del Large Insertion of up to 43 aa
41 Aminobutyraldehyde dehydrogenase Syn T-C (pos 342)
  1. Position are relative to the gene set alignment. Alignments are provided as Additional file 2