Table 6 Analysis of polymorphic genes that differentiate biovar 4 from other genomes
Set | Annotation | Type | Description |
|---|---|---|---|
0 | The major facilitator superfamily (MFS) is a class of membrane transport proteins | Syn | T-G (pos 87)| |
1 | Hypothetical protein | Syn | T-G (pos 283) |
2 | Multiple antibiotic resistance transporter | NonSyn | C-T (pos 424), P-S (pos 142) |
3 | Calcium/calmodulin dependent protein kinase II | Syn | C-A (pos 95) |
4 | Peptidase Do | Syn | C-A(pos 829) |
5 | 30S ribosomal protein S14 | Syn | C-A(pos 124) |
6 | Hypothetical protein | NonSyn | G-T (pos 186), Q-H (pos 62) |
7 | Excinuclease ABC subunit B | Stop | STOP codon |
8 | Hypothetical protein similar with BA14K family domain | In/Del | IN/DEL 12 nuc (pos 327) |
9 | Flagellar basal body rod protein FlgC | NonSyn | G-A (pos 55), A-T (pos 19) |
10 | Dipeptide ABC transporter permease DppC | NonSyn | T-C (pos 478), S-P (pos 160) |
11 | Na(+)/H(+) antiporter NhaA | Stop | IN/DEL-ORF G?- (pos 1917) |
12 | Hypothetical protein | Syn | G-A (pos 609), C-T (pos 633) |
13 | DNA-3-methyladenine glycosylase | Syn | C-T (pos 483) |
14 | Mannosyltransferase | NonSyn | A-C(pos 980), K-N (pos 349) |
15 | Hypothetical protein | NonSyn | C-T(pos 229), T-I (pos75) |
16 | Class II fumarate hydratase | NonSyn | C-T(pos 1323), A-V (pos 441) |
17 | Hypothetical protein | Syn | G-C(pos 250) |
18 | Acyl carrier protein | Syn | C-T (pos 260) |
19 | Tyrosine--tRNA ligase | Syn | C-G(pos1107) |
20 | Glycosyl transferase | NonSyn | C-T(pos 35), V-A(pos12) |
21 | D-alanyl-D-alanine carboxypeptidase | NonSyn | A-G(pos 451), T-A (pos 151) |
22 | Malic enzyme | Syn | T-C (pos723) |
23 | X-Pro dipeptidase | T-C(pos 280), F-L (pos 94) | |
24 | Putative multidrug efflux transporter protein | Stop | G-T(pos 229), E-STOP |
25 | D-ribose ABC transporter substrate-binding protein | NonSyn | C-T(pos 396), A-V(pos 132) |
26 | NAD-dependent dehydratase | NonSyn | A-G(pos196), M-V (pos 66) |
27 | Phosphogluconate dehydratase | NonSyn | C-T(pos620), A-V(pos 207) |
28 | Hypothetical protein | Syn | C-T (pos628) |
29 | Hypothetical protein | NonSyn | A-G(pos235), T-A (pos 79) |
30 | Glutamine synthetase | Syn | G-A(pos 1306) |
31 | N-formylglutamate amidohydrolase | Syn | A-G (pos 541) |
32 | Hypothetical protein | NonSyn | A-T(pos 36), K-M(pos12) |
33 | Branched-chain amino acid ABC transporter, ATP-binding/permease protein | NonSyn | A-G(pos452), N-S(pos 151) |
34 | DNA topoisomerase | NonSyn | C-A(pos 1827), |
R-S(pos 609) | |||
35 | Aspartate carbamoyltransferase | Syn | A-G(pos 540) |
36 | 8-amino-7-oxononanoate synthase | NonSyn | A-G(pos 991), R-G(pos 331) |
37 | Secretion protein HlyD family protein-hemolysin secretion protein D | NonSyn | G-A(pos 415), V-I(pos 139) |
38 | Tetracycline resistance protein TetB | NonSyn | T-G(pos 765), F-L(pos 225) |
39 | Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | NonSyn | G-T(pos 590), F-C(pos 197) |
40 | ABC transporter permease | In/Del | Large Insertion of up to 43 aa |
41 | Aminobutyraldehyde dehydrogenase | Syn | T-C (pos 342) |