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Table 6 Number of genes associated with general COG functional categories of Paraburkholderia terrae strain BS110, BS007, and BS437

From: Draft genome sequences of three fungal-interactive Paraburkholderia terrae strains, BS007, BS110 and BS437

Code

Strain BS110

Strain BS007

Strain BS437

Description

Value

% of totala

Value

% of totala

Value

% of totala

J

242

2.03

242

2.03

253

2.06

Translation, ribosomal structure and biogenesis

A

1

0.008

1

0.008

1

0.008

RNA processing and modification

K

1030

8.65

1030

8.65

1026

8.37

Transcription

L

422

3.54

422

3.54

443

3.61

Replication, recombination and repair

B

4

0.03

4

0.03

4

0.03

Chromatin structure and dynamics

D

68

0.57

68

0.57

69

0.56

Cell cycle control, cell division, chromosome partitioning

V

95

0.79

95

0.79

104

0.84

Defense mechanisms

T

573

4.81

573

4.8

605

4.93

Signal transduction mechanisms

M

547

4.59

547

4.59

553

4.51

Cell wall/membrane biogenesis

N

161

1.35

161

1.35

172

1.4

Cell motility

U

202

1.69

202

1.69

210

1.71

Intracellular trafficking and secretion

O

267

2.24

267

2.24

271

2.21

Posttranslational modification, protein turnover, chaperones

C

774

6.5

774

6.5

793

6.47

Energy production and conversion

G

784

6.58

784

6.58

769

6.27

Carbohydrate transport and metabolism

E

1193

10.02

1193

10.02

1188

9.69

Amino acid transport and metabolism

F

114

0.96

114

0.96

109

0.89

Nucleotide transport and metabolism

H

263

2.21

263

2.21

268

2.18

Coenzyme transport and metabolism

I

461

3.87

461

3.87

476

3.88

Lipid transport and metabolism

P

706

5.93

706

5.93

713

5.81

Inorganic ion transport and metabolism

Q

387

3.25

387

3.25

395

3.22

Secondary metabolite biosynthesis, transport and catabolism

R

1496

12.57

1496

12.57

1544

12.59

General function prediction only

S

682

5.73

682

5.73

703

5.73

Function unknown

W

15

0.13

15

0.13

15

0.12

Extracellular structure

Z

1

0.008

1

0.008

1

0.008

Cytoskeleton

  1. aThe total is based on the total number of protein encoding genes in the genome