The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003

Palevich, Nikola; Kelly, William J.; Leahy, Sinead C.; Altermann, Eric; Rakonjac, Jasna; Attwood, Graeme T.

doi:10.1186/s40793-017-0285-8

Environmental Microbiome

Table 9 Genes encoding predicted polysaccharide degrading enzymes in the MB2003 genome

From: The complete genome sequence of the rumen bacterium Butyrivibrio hungatei MB2003

Locus tag	Name	Annotation	Size (aa)	CAZy^a	Binding domains
bhn_I2518	bga2A	β-galactosidase^b	1034	GH2
bhn_I0827	bga2C	β-galactosidase^b	714	GH2
bhn_I1587	bga2B	β-galactosidase^b	825	GH2
bhn_I0200	gh2B	glycoside hydrolase family 2^b	641	GH2
bhn_I1127	gh2A	glycoside hydrolase family 2^b	912	GH2
bhn_I1849	gh2C	glycoside hydrolase family 2^b	776	GH2
bhn_III062	bgl3A	β-glucosidase^b	803	GH3
bhn_I0707	bgl3B	β-glucosidase^b	808	GH3
bhn_I0180	bgl3C	β-glucosidase^b	671	GH3
bhn_I0706	*bgl3D*	β-glucosidase ^b	982	GH3	C-terminal TMH
bhn_I0189	xyl3A	β-xylosidase^b	707	GH3
bhn_I1640	*bhx3A*	β-N-acetylhexosaminidase ^b	427	GH3
bhn_I1693	*cel5C*	endo-1,4-β-glucanase ^b	543	GH5	CBM2a
bhn_I0165	*cel5A*	endo-1,4-β-glucanase/xylanase ^b	417	GH5
bhn_I1756	xyn8A	reducing end xylose-releasing exo-oligoxylanase^b	383	GH8
bhn_I0834	cel9B	cellodextrinase^b	552	GH9	CelD
bhn_I0568	*xyn10B*	endo-1,4-β-xylanase ^b	425	GH10
bhn_I0169	*xyn10A*	endo-1,4-β-xylanase ^b	451	GH10
bhn_I1458	glgB2	1,4-α-glucan branching enzyme^b	824	GH13	CBM48
bhn_I0053	glgB1	1,4-α-glucan branching enzyme^b	663	GH13	CBM48
bhn_I2702	amy13A	α-amylase^b	697	GH13	CBM34
bhn_I0634	*amy13B*	α-amylase ^b	536	GH13
bhn_I1680	amy13C	α-amylase^b	434	GH13
bhn_I0669	amy13D	α-amylase^b	511	GH13
bhn_I1153	glgX1	glycogen debranching enzyme^b	726	GH13	CBM48
bhn_I1315	glgX2	glycogen debranching enzyme^b	648	GH13
bhn_I0652	suc13P	sucrose phosphorylase^b	553	GH13
bhn_I2526	*chi18A*	chitinase ^b	567	GH18
bhn_I1254	*lyc25A*	lysozyme ^b	362	GH25
bhn_III074	*lyc25B*	lysozyme ^b	515	GH25
bhn_I0191	*lyc25C*	lysozyme ^b	561	GH25
bhn_I1763	*lyc25D*	lysozyme ^b	242	GH25
bhn_I0527	lyc25E	lysozyme^b	1213	GH25	Big2 (×2)
bhn_I1287	aga27A	α-galactosidase^b	577	GH27
bhn_I0082	gh27A	glycoside hydrolase family 27^b	442	GH27
bhn_I1952	pg128A	polygalacturonase^b	531	GH28
bhn_I2679	pgl28B	polygalacturonase^b	519	GH28
bhn_I1087	fuc29A	α-L-fucosidase^b	475	GH29
bhn_I2734	*gh30A*	glycoside hydrolase family 30 ^b	575	GH30
bhn_I1581	gh31A	glycoside hydrolase family 31^b	756	GH31
bhn_I2191	gh31C	glycoside hydrolase family 31^b	674	GH31
bhn_I0283	gh31B	glycoside hydrolase family 31^b	635	GH31
bhn_I0582	scr32A	sucrose-6-phosphate hydrolase^b	493	GH32
bhn_I0826	bga35A	β-galactosidase^b	622	GH35
bhn_I1817	bga35B	β-galactosidase^b	735	GH35
bhn_I0644	aga36A	α-galactosidase^b	782	GH36
bhn_I1583	aga36B	α-galactosidase^b	620	GH36
bhn_I1945	aga36C	α-galactosidase^b	730	GH36
bhn_I0086	man38A	α-mannosidase^b	1053	GH38
bhn_III010	bga42A	β-galactosidase^b	673	GH42
bhn_I0167	*xsa43A*	xylosidase/arabinofuranosidase ^b	543	GH43	CBM6
bhn_I0981	xsa43B	xylosidase/arabinofuranosidase^b	301	GH43
bhn_I2037	xsa43C	xylosidase/arabinofuranosidase^b	302	GH43
bhn_I2111	xsa43D	xylosidase/arabinofuranosidase^b	517	GH43
bhn_I2735	xsa43E	xylosidase/arabinofuranosidase^b	352	GH43
bhn_I0032	xsa43G	xylosidase/arabinofuranosidase^b	312	GH43
bhn_I0164	xsa43F	xylosidase/arabinofuranosidase and esterase^b	925	GH43
bhn_I1509	arf51C	α-L-arabinofuranosidase^b	630	GH51
bhn_I2228	arf51A	α-L-arabinofuranosidase^b	502	GH51
bhn_I0010	arf51B	α-L-arabinofuranosidase^b	504	GH51
bhn_I0670	*agn53A*	arabinogalactan endo-1,4-β-galactosidase ^b	439	GH53
bhn_I0183	agu67A	α-D-glucuronidase^b	662	GH67
bhn_I2177	*mal77A*	4-α-glucanotransferase ^b	506	GH77
bhn_I0697	ugl88A	unsaturated glucuronyl hydrolase^b	385	GH88
bhn_I2381	ugl88B	unsaturated glucuronyl hydrolase^b	383	GH88
bhn_I2196	cbp94A	cellobiose phosphorylase^b	814	GH94
bhn_I1582	gh95A	glycoside hydrolase family 95^b	734	GH95
bhn_I2548	gh105A	unsaturated rhamnogalacturonyl hydrolase^b	349	GH105
bhn_I0090	gh105B	unsaturated rhamnogalacturonyl hydrolase^b	363	GH105
bhn_I2549	gnpA	D-galactosyl-β-1-4-L-rhamnose phosphorylase^b	722	GH112
bhn_I0185	gh115A	α-glucuronidase^b	947	GH115
bhn_I1083	xyl120A	xylosidase^b	861	GH120
bhn_I1738	xyl120B	xylosidase^b	664	GH120
bhn_III076	*est1A*	feruloyl esterase ^b	351	CE1
bhn_I1244	est2A	acetyl-xylan esterase^b	372	CE2
bhn_III070	est4A	polysaccharide deacetylase^b	207	CE4
bhn_I0843	*est4C*	polysaccharide deacetylase ^b	280	CE4
bhn_I0666	nagA	N-acetylglucosamine-6-phosphate deacetylase^b	371	CE9
bhn_I1609	est12A	carbohydrate esterase family 12^b	584	CE12
bhn_I1927	est12B	carbohydrate esterase family 12^b	244	CE12
bhn_I1926	pl11A	polysaccharide lyase^b	746	PL11
bhn_I0657	glgP1	glycogen phosphorylase^b	769	GT35
bhn_I2673	glgP2	glycogen phosphorylase^b	824	GT35
bhn_I1848	–	carbohydrate binding protein ^b	983		CBM2a (×1), CBM6 (×6)

^aCAZy descriptions and classifications compiled from the CAZy database [68]. ^bIndicates homologues in the B. hungatei JK615^T draft genome. Genes encoding predicted secreted polysaccharide degrading enzymes are in bold

Back to article page

ISSN: 2524-6372

Contact us

Submission enquiries: journalsubmissions@springernature.com