Table 5 ANI and DDH Genomic comparison between B. shewense sp. nov. ERR11T and reference Bradyrhizobium species
| Â | Genome name | NCBI/ENA accession number | MSLA | ANI was computed from protein-coding genes of the genomes using the MiSI program | Â | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | Â | Â | 1 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 |
1 | B. shewense sp.nov. ERR11T | FMAI01000000 | Â | Â | 95.2 | 95.2 | 89.6 | 89.3 | 89.3 | 89.2 | 89.1 | 89.0 | 89.0 | 89.0 | 89.0 | 86.9 | 89.6 |
2 | B. ottawaense USDA 4 | AXAF00000000 | 96.0 | 53.1 | Â | 99.9 | 90.0 | 90.3 | 90.3 | 89.1 | 90.2 | 89.1 | 89.1 | 90.0 | 89.1 | 87.1 | 90.1 |
3 | B. ottawaense CCBAU15615 | AJQG0100000 | 96.0 | 58.3 | 99.0 | Â | 90.2 | 90.3 | 90.4 | 89.2 | 90.3 | 89.2 | 89.1 | 90.0 | 89.2 | 87.1 | 90.3 |
4 | B. liaoningense CCBAU 83689 | AJQD00000000 | 95.0 | 36.6 | 38.0 | 38.7 | Â | 89.7 | 89.6 | 88.8 | 89.2 | 90.4 | 90.4 | 89.6 | 90.4 | 87.0 | 99.9 |
5 | B. huanghuaihaiense CCBAU 23303T | PRJNA255602 | 94.0 | 35.6 | 39.2 | 39.4 | 37.4 | Â | 91.2 | 90.0 | 90.3 | 89.3 | 89.2 | 89.8 | 89.2 | 87.6 | 89.7 |
6 | B. diazoefficiens USDA 110T | CP011360 | 94.0 | 35.7 | 39.3 | 39.6 | 37.2 | 42.1 | Â | 89.4 | 91.0 | 88.8 | 88.8 | 89.7 | 88.8 | 87.7 | 89.6 |
7 | B.arachidis LMG 26795T | FPBQ01000000 | 94.0 | 35.4 | 35.1 | 35.2 | 34.8 | 37.3 | 35.9 | Â | 89.5 | 88.6 | 88.6 | 89.6 | 88.6 | 87.7 | 88.8 |
8 | B.japonicum USDA 6T | AP012206 | 94.0 | 35.4 | 39.0 | 39.3 | 36.3 | 39.3 | 41.0 | 36.4 | Â | 88.4 | 88.4 | 89.3 | 88.5 | 87.5 | 89.2 |
9 | B.yuanmingense CCBAU 10071T | FMAE00000000 | 94.0 | 34.7 | 34.7 | 35.1 | 38.3 | 35.3 | 34.5 | 34.0 | 33.6 | Â | 100.0 | 89.1 | 98.2 | 86.8 | 90.3 |
10 | B.yuanmingense CGMCC1.3531 | PRJNA255601 | 94.0 | 34.7 | 34.7 | 35.0 | 38.3 | 35.5 | 34.5 | 33.8 | 33.6 | 100.0 | Â | 90.0 | 98.2 | 86.8 | 90.3 |
11 | B.daqingense CGMCC 1.10947T | PRJNA255603 | 94.0 | 34.9 | 38.3 | 38.5 | 37.0 | 37.8 | 37.7 | 34.0 | 36.7 | 35.1 | 35.1 | Â | 89.1 | 86.8 | 89.7 |
12 | B.yuanmingense CCBAU 35157 | AJQL00000000 | 94.0 | 34.7 | 35.0 | 35.1 | 38.4 | 35.5 | 34.5 | 34.0 | 33.7 | 82.5 | 82.5 | 35.0 | Â | 86.8 | 90.4 |
13 | B. manausense BR3351T | LJYG00000000 | 94.0 | 31.1 | 58.1 | 31.6 | 31.5 | 32.4 | 32.3 | 32.5 | 32.2 | 31.1 | 31.1 | 30.9 | 31.0 | Â | 87.0 |
14 | B.liaoningense CCBAU 05525 | AJQC00000000 | 95.0 | 36.6 | 38.3 | 39.1 | 99.5 | 37.7 | 37.6 | 34.8 | 36.7 | 38.2 | 38.2 | 37.3 | 38.3 | 31.6 | Â |
| Â | Â | Â | DDH values were predicted by the Genome-to-Genome Distance calculator 2.0, formula 2 | Â | Â | ||||||||||||