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Table 5 ANI and DDH Genomic comparison between B. shewense sp. nov. ERR11T and reference Bradyrhizobium species

From: Draft genome sequences of Bradyrhizobium shewense sp. nov. ERR11T and Bradyrhizobium yuanmingense CCBAU 10071T

  Genome name NCBI/ENA accession number MSLA ANI was computed from protein-coding genes of the genomes using the MiSI program  
    1 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1 B. shewense sp.nov. ERR11T FMAI01000000    95.2 95.2 89.6 89.3 89.3 89.2 89.1 89.0 89.0 89.0 89.0 86.9 89.6
2 B. ottawaense USDA 4 AXAF00000000 96.0 53.1   99.9 90.0 90.3 90.3 89.1 90.2 89.1 89.1 90.0 89.1 87.1 90.1
3 B. ottawaense CCBAU15615 AJQG0100000 96.0 58.3 99.0   90.2 90.3 90.4 89.2 90.3 89.2 89.1 90.0 89.2 87.1 90.3
4 B. liaoningense CCBAU 83689 AJQD00000000 95.0 36.6 38.0 38.7   89.7 89.6 88.8 89.2 90.4 90.4 89.6 90.4 87.0 99.9
5 B. huanghuaihaiense CCBAU 23303T PRJNA255602 94.0 35.6 39.2 39.4 37.4   91.2 90.0 90.3 89.3 89.2 89.8 89.2 87.6 89.7
6 B. diazoefficiens USDA 110T CP011360 94.0 35.7 39.3 39.6 37.2 42.1   89.4 91.0 88.8 88.8 89.7 88.8 87.7 89.6
7 B.arachidis LMG 26795T FPBQ01000000 94.0 35.4 35.1 35.2 34.8 37.3 35.9   89.5 88.6 88.6 89.6 88.6 87.7 88.8
8 B.japonicum USDA 6T AP012206 94.0 35.4 39.0 39.3 36.3 39.3 41.0 36.4   88.4 88.4 89.3 88.5 87.5 89.2
9 B.yuanmingense CCBAU 10071T FMAE00000000 94.0 34.7 34.7 35.1 38.3 35.3 34.5 34.0 33.6   100.0 89.1 98.2 86.8 90.3
10 B.yuanmingense CGMCC1.3531 PRJNA255601 94.0 34.7 34.7 35.0 38.3 35.5 34.5 33.8 33.6 100.0   90.0 98.2 86.8 90.3
11 B.daqingense CGMCC 1.10947T PRJNA255603 94.0 34.9 38.3 38.5 37.0 37.8 37.7 34.0 36.7 35.1 35.1   89.1 86.8 89.7
12 B.yuanmingense CCBAU 35157 AJQL00000000 94.0 34.7 35.0 35.1 38.4 35.5 34.5 34.0 33.7 82.5 82.5 35.0   86.8 90.4
13 B. manausense BR3351T LJYG00000000 94.0 31.1 58.1 31.6 31.5 32.4 32.3 32.5 32.2 31.1 31.1 30.9 31.0   87.0
14 B.liaoningense CCBAU 05525 AJQC00000000 95.0 36.6 38.3 39.1 99.5 37.7 37.6 34.8 36.7 38.2 38.2 37.3 38.3 31.6  
    DDH values were predicted by the Genome-to-Genome Distance calculator 2.0, formula 2   
  1. The numbers in MLSA column indicate recA, glnII, rpoB concatenated gene sequence similarities between ERR11T and reference strains. The numbers below the diagonal are DDH values predicted between pairwise genomes. The numbers above the diagonal are ANI values between genomes; in all ANI calculations AF was > = 60%. Reference type strains are indicated with superscript ‘T’; B, Bradyrhizobium