Table 4 Genome and annotation statistics for P. apiarius and P. thiaminolyticus
Attribute | P. apiarius NRRL B-23460 | |||
|---|---|---|---|---|
Value | % of Total | Value | % of Total | |
Genome size (bp) | 5,404,821 | 100.00 | 6,537,496 | 100.00 |
DNA coding (bp) | 4,642,405 | 85.89 | 5,508,364 | 84.26 |
DNA GÂ +Â C (bp) | 2,729,114 | 50.49 | 3,507,168 | 53.65 |
DNA scaffolds | 51 | 100.00 | 47 | 100.00 |
Total genes | 4957 | 100.00 | 5880 | 100.00 |
Protein coding genes | 4822 | 97.28 | 5756 | 97.89 |
RNA genes | 135 | 2.72 | 124 | 2.11 |
Pseudo genes | 0 | 0 | 0 | 0 |
Genes in internal clusters | 1259 | 25.40 | 1709 | 29.06 |
Genes with function prediction | 3756 | 75.77 | 4458 | 75.82 |
Genes assigned to COGs | 3092 | 62.38 | 3654 | 62.14 |
Genes with Pfam domains | 3910 | 78.88 | 4674 | 79.49 |
Genes with signal peptides | 304 | 6.13 | 350 | 5.95 |
Genes with transmembrane helices | 1385 | 27.94 | 1658 | 28.20 |
CRISPR repeats | 0 | 0 | 0 | 0 |