First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Table 4 Genome statistics of Zoogloea sp. LCSB751

Attribute	Value	% of Total^a
Genome size (bp)	5,817,831	100.00
DNA coding (bp)^b	4,966,077	85.36
DNA G + C (bp)	3,733,728	64.18
DNA scaffolds	773	100.00
Total genes	5,202^c / 5,200^d	100.00^c / 100.00^d
Protein coding genes	5,125^c / 5,118^d	98.52^c / 98.42^d
RNA genes	77^c / 80^d	1.48^c / 1.54^d
Pseudo genes	unknown	unknown
Genes in internal clusters	unknown	unknown
Genes with function prediction ^c	3661	70.38
Genes assigned to COGs	4191	80.56
Genes with Pfam domains	4202	80.78
Genes with signal peptides	505	9.71
Genes with transmembrane helices	1157	22.24
CRISPR repeats	2^d / 3^e	2.85

^aTotal is based on either the size of the genome in base pairs, total number of scaffolds or the total number of genes in the annotated genome
^bCumulative length of genes, without considering overlaps
^cAs predicted by RAST server [27]
^dAs predicted by Pokka [26]
^eAs predicted by MetaCRT [31]

ISSN: 2524-6372