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Table 4 Genome statistics of Zoogloea sp. LCSB751

From: First draft genome sequence of a strain belonging to the Zoogloea genus and its gene expression in situ

Attribute Value % of Totala
Genome size (bp) 5,817,831 100.00
DNA coding (bp)b 4,966,077 85.36
DNA G + C (bp) 3,733,728 64.18
DNA scaffolds 773 100.00
Total genes 5,202c / 5,200d 100.00c / 100.00d
Protein coding genes 5,125c / 5,118d 98.52c / 98.42d
RNA genes 77c / 80d 1.48c / 1.54d
Pseudo genes unknown unknown
Genes in internal clusters unknown unknown
Genes with function prediction c 3661 70.38
Genes assigned to COGs 4191 80.56
Genes with Pfam domains 4202 80.78
Genes with signal peptides 505 9.71
Genes with transmembrane helices 1157 22.24
CRISPR repeats 2d / 3e 2.85
  1. aTotal is based on either the size of the genome in base pairs, total number of scaffolds or the total number of genes in the annotated genome
  2. bCumulative length of genes, without considering overlaps
  3. cAs predicted by RAST server [27]
  4. dAs predicted by Pokka [26]
  5. eAs predicted by MetaCRT [31]