Table 4 Number of genes associated with general COG functional categories
From: Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus
Code | Value | % age | Description |
|---|---|---|---|
J | 215 | 2.07 | Translation, ribosomal structure and biogenesis |
A | 121 | 1.16 | RNA processing and modification |
K | 83 | 0.80 | Transcription |
L | 56 | 0.54 | Replication, recombination and repair |
B | 42 | 0.40 | Chromatin structure and dynamics |
D | 63 | 0.61 | Cell cycle control, Cell division, chromosome partitioning |
V | 4 | 0.04 | Defense mechanisms |
T | 114 | 1.10 | Signal transduction mechanisms |
M | 22 | 0.21 | Cell wall/membrane/envelope biogenesis |
N | 0 | 0.00 | Cell motility |
U | 116 | 1.12 | Intracellular trafficking and secretion |
O | 245 | 2.36 | Posttranslational modification, protein turnover, chaperones |
C | 168 | 1.62 | Energy production and conversion |
G | 78 | 0.75 | Carbohydrate transport and metabolism |
E | 144 | 1.39 | Amino acid transport and metabolism |
F | 44 | 0.42 | Nucleotide transport and metabolism |
H | 45 | 0.43 | Coenzyme transport and metabolism |
I | 86 | 0.83 | Lipid transport and metabolism |
P | 64 | 0.62 | Inorganic ion transport and metabolism |
Q | 28 | 0.27 | Secondary metabolites biosynthesis, transport and catabolism |
R | 211 | 2.03 | General function prediction only |
S | 66 | 0.64 | Function unknown |
– | 8374 | 80.59 | Not in COGs |