Table 5 Unique Cluster Orthologous Groups present in the genome of C. costaii A37T2^T

C

Energy production and conversion

COG0280, COG0374, COG0680, COG1740

E

Amino acid transport and metabolism

COG1027, COG1586, COG2355, COG3104

F

Nucleotide transport and metabolism

COG0027

G

Carbohydrate transport and metabolism

COG0021, COG0058, COG0588, COG0662, COG0837, COG1080, COG1803, COG1925, COG2079, COG2893, COG3444, COG3716, COG3934

H

Coenzyme transport and metabolism

COG0561, COG1056, COG2091, COG2227, COG2329

I

Lipid transport and metabolism

COG0671, COG0821, COG2246

J

Translation, ribosomal structure and biogenesis

COG0060, COG0255, COG0257, COG0267, COG0268, COG0333, COG4680

K

Transcription

COG1476, COG4933

L

Replication, recombination and repair

COG0863, COG1722

M

Cell wall/membrane/envelope biogenesis

COG1083, COG1922, COG2089, COG2829, COG2982, COG3511, COG3637

O

Posttranslational modification, protein turnover, chaperones

COG0068, COG0298, COG0309, COG0409

P

Inorganic ion transport and metabolism

COG0428, COG1218, COG1230, COG1416, COG4772

Q

Secondary metabolites biosynthesis, transport and catabolism

COG2130, COG2162, COG3733, COG4242

R

General function prediction only

COG0312, COG0375, COG0429, COG0457, COG1062, COG1373, COG2320, COG3153, COG3488, COG4674, COG0561, COG2130, COG4242

S

Function unknown

COG0393, COG1286, COG2442, COG2962, COG3219, COG3247, COG3310, COG3361, COG3461, COG3477, COG3487, COG3489, COG3528, COG3548, COG3918, COG3943, COG4487, COG4700, COG4859, COG4924

T

Signal transduction mechanisms

COG0517, COG2184, COG2203, COG3292, COG1925

U

Intracellular trafficking, secretion, and vesicular transport

COG1272, COG1826, COG3451

V

Defense mechanisms

COG0286, COG0610, COG0732, COG3512, COG3513, COG4823, COG5499

X

Mobilome: prophages, transposons

COG3385, COG3436, COG3600, COG3654