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Table 3 Genome statistics

From: Genomics insights into production of 2-methylisoborneol and a putative cyanobactin by Planktothricoides sp. SR001

Attribute Value % of total
Genome size (bp) 7,066,705 100.0
DNA coding (bp) 5,499,857 77.8
DNA Gā€‰+ā€‰C (bp) 3,066,802 43.4
DNA scaffolds 165 -
Total genes 5,776 100.0
Protein coding genes 5,049 87.4
RNA genesa 53 0.9
Pseudo genesa 676 11.7
Genes with function predictionb 3,816 64.1
Genes assigned to COGsb 2,714 45.6
Genes with Pfam domainsb 4,079 68.6
Genes with signal peptidesb 159 2.7
Genes with transmembrane helicesb 1,204 20.2
CRISPR repeatsa 12 -
  1. aGenome statistics obtained using the NCBI Prokaryotic Genome Annotation Pipeline [33]
  2. bGenome statistics obtained using the JGI IMG pipeline [32]