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Table 3 Genome statistics

From: Genomics insights into production of 2-methylisoborneol and a putative cyanobactin by Planktothricoides sp. SR001

Attribute

Value

% of total

Genome size (bp)

7,066,705

100.0

DNA coding (bp)

5,499,857

77.8

DNA G + C (bp)

3,066,802

43.4

DNA scaffolds

165

-

Total genes

5,776

100.0

Protein coding genes

5,049

87.4

RNA genesa

53

0.9

Pseudo genesa

676

11.7

Genes with function predictionb

3,816

64.1

Genes assigned to COGsb

2,714

45.6

Genes with Pfam domainsb

4,079

68.6

Genes with signal peptidesb

159

2.7

Genes with transmembrane helicesb

1,204

20.2

CRISPR repeatsa

12

-

  1. aGenome statistics obtained using the NCBI Prokaryotic Genome Annotation Pipeline [33]
  2. bGenome statistics obtained using the JGI IMG pipeline [32]