Table 3 Genome statistics
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,201,518 | 100.00 |
DNA coding (bp) | 2,937,381 | 91.75 |
DNA G + C (bp) | 1,994,510 | 62.30 |
DNA scaffolds | 18 | 100.00 |
Total genes | 3,197 | 100.00 |
Protein coding genes | 3,135 | 98.06 |
RNA genes | 62 | 1.94 |
Pseudo genes | 538 | 16.83 |
Genes in internal clusters | 267 | 8.35 |
Genes with function prediction | 2,597 | 81.23 |
Genes assigned to COGs | 2,258 | 70.63 |
Genes with Pfam domains | 2,700 | 84.45 |
Genes with signal peptides | 376 | 11.76 |
Genes with transmembrane helices | 767 | 23.99 |
CRISPR repeats | 2 | 0.04 |