Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

Driscoll, Connor B.; Otten, Timothy G.; Brown, Nathan M.; Dreher, Theo W.

doi:10.1186/s40793-017-0224-8

Environmental Microbiome

Table 1 Classification and general features of UKL genomes according to MIGS specifications [63]

From: Towards long-read metagenomics: complete assembly of three novel genomes from bacteria dependent on a diazotrophic cyanobacterium in a freshwater lake co-culture

MIGS ID	Property	Hyphomonadaceae UKL13-1	Evidence code^a	Betaproteobacterium UKL13-2	Evidence code	Bacteroidetes UKL13-3	Evidence code^a
	Classification	Domain Bacteria	TAS [64]	Domain Bacteria	TAS [64]	Domain Bacteria	TAS [64]
		Phylum Proteobacteria	TAS [65]	Phylum Proteobacteria	TAS [65]	Phylum Bacteroidetes	TAS [66]
		Class Alphaproteobacteria	TAS [67]	Class Betaproteobacteria	TAS [68]	Class incertae sedis	NAS
		Order Rhodobacterales	TAS [69]	Order incertae sedis	NAS	Order incertae sedis	NAS
		Family Hyphomonadaceae	TAS [70]	Family incertae sedis	NAS	Family incertae sedis	NAS
		Genus incertae sedis	NAS	Genus incertae sedis	NAS	Genus incertae sedis	NAS
		Species incertae sedis	NAS	Species incertae sedis	NAS	Species incertae sedis	NAS
		Strain UKL13-1	NAS	Strain UKL13-2	NAS	Strain UKL13-3	NAS
	Gram stain	Unknown	NAS	Unknown	NAS	Unknown	NAS
	Cell shape	Unknown	NAS	Unknown	NAS	Unknown	NAS
	Motility	Unknown	NAS	Unknown	NAS	Unknown	NAS
	Sporulation	Unknown	NAS	Unknown	NAS	Unknown	NAS
	Temperature range	22-28 °C	NAS	22-28 °C	NAS	22-28 °C	NAS
	Optimum temperature	Unknown	NAS	Unknown	NAS	Unknown	NAS
	pH range; Optimum	7.5-8.5; Unknown	NAS	7.5-8.5; Unknown	NAS	7.5-8.5; Unknown	NAS
	Carbon source	Unknown	NAS	Unknown	NAS	Unknown	NAS
	Terminal electron acceptor	Unknown	NAS	Unknown	NAS	Unknown	NAS
MIGS-6	Habitat	Freshwater lake	NAS	Freshwater lake	NAS	Freshwater lake	NAS
MIGS-6.3	Salinity	0.25%	NAS	0.25%	NAS	0.25%	NAS
MIGS-22	Oxygen requirement	Aerobic	NAS	Aerobic	NAS	Aerobic	NAS
MIGS-15	Biotic relationship	Syntrophic	TAS [71]	Syntrophic	TAS [71]	Syntrophic	TAS [71]
MIGS-14	Pathogenicity	Unknown	NAS	Unknown	NAS	Unknown	NAS
MIGS-4	Geographic location	Upper Klamath Lake, Oregon, USA	NAS	Upper Klamath Lake, Oregon, USA	NAS	Upper Klamath Lake, Oregon, USA	NAS
MIGS-5	Sample collection	Aug 6, 2013	NAS	Aug 6, 2013	NAS	Aug 6, 2013	NAS
MIGS-4.1	Latitude	42°22' N	NAS	42°22' N	NAS	42°22' N	NAS
MIGS-4.2	Longitude	-121°55' W	NAS	-121°55' W	NAS	-121°55' W	NAS
MIGS-4.4	Altitude	1,260 m	NAS	1,260 m	NAS	1,260 m	NAS

^aEvidence Codes IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are derived from the Gene Ontology project

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ISSN: 2524-6372

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