Table 4 Numbers of genes associated with general COG functional categories
Microbacterium sp. H83 | Mycobacterium iranicum H39 | Plantibacter sp. H53 | Pseudomonas oryzihabitans H72 | Staphylococcus capitis H36 | S. capitis H65 | S. cohnii H62 | S. hominis H69 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Code | Description | Value | %a | Value | % | Value | % | Value | % | Value | % | Value | % | Value | % | Value | % |
J | Translation, ribosomal structure and biogenesis | 167 | 4.8 | 191 | 3.1 | 172 | 4.6 | 242 | 4.9 | 188 | 8.0 | 191 | 8.0 | 192 | 7.2 | 187 | 8.0 |
A | RNA processing and modification | 1 | 0.0 | 1 | 0.0 | 1 | 0.0 | 1 | 0.0 | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 |
K | Transcription | 265 | 7.7 | 403 | 6.5 | 306 | 8.1 | 328 | 6.7 | 125 | 5.3 | 132 | 5.6 | 141 | 5.3 | 128 | 5.4 |
L | Replication, recombination and repair | 109 | 3.1 | 120 | 1.9 | 105 | 2.8 | 134 | 2.7 | 86 | 3.7 | 95 | 4.0 | 89 | 3.3 | 101 | 4.3 |
B | Chromatin structure and dynamics | 0 | 0.0 | 0 | 0.0 | 0 | 0.0 | 2 | 0.0 | 1 | 0.0 | 1 | 0.0 | 1 | 0.0 | 0 | 0.0 |
D | Cell cycle control, Cell division, chromosome partitioning | 24 | 0.7 | 33 | 0.5 | 24 | 0.6 | 38 | 0.8 | 24 | 1.0 | 26 | 1.1 | 25 | 0.9 | 27 | 1.1 |
V | Defense mechanisms | 50 | 1.4 | 118 | 1.9 | 71 | 1.9 | 80 | 1.6 | 50 | 2.1 | 41 | 1.7 | 49 | 1.8 | 38 | 1.6 |
T | Signal transduction mechanisms | 87 | 2.5 | 189 | 3.1 | 121 | 3.2 | 286 | 5.8 | 67 | 2.8 | 68 | 2.9 | 65 | 2.4 | 66 | 2.8 |
M | Cell wall/membrane biogenesis | 115 | 3.3 | 222 | 3.6 | 140 | 3.7 | 245 | 5.0 | 96 | 4.1 | 101 | 4.2 | 104 | 3.9 | 108 | 4.6 |
N | Cell motility | 31 | 0.9 | 11 | 0.2 | 9 | 0.2 | 153 | 3.1 | 6 | 0.3 | 8 | 0.3 | 5 | 0.2 | 4 | 0.2 |
U | Intracellular trafficking and secretion | 28 | 0.8 | 22 | 0.4 | 17 | 0.5 | 77 | 1.6 | 19 | 0.8 | 20 | 0.8 | 14 | 0.5 | 18 | 0.8 |
O | Posttranslational modification, protein turnover, chaperones | 97 | 2.8 | 138 | 2.2 | 92 | 2.4 | 161 | 3.3 | 75 | 3.2 | 78 | 3.3 | 78 | 2.9 | 74 | 3.1 |
C | Energy production and conversion | 141 | 4.1 | 331 | 5.4 | 128 | 3.4 | 243 | 5.0 | 111 | 4.7 | 111 | 4.7 | 109 | 4.1 | 99 | 4.2 |
G | Carbohydrate transport and metabolism | 270 | 7.8 | 244 | 4.0 | 392 | 10.4 | 275 | 5.6 | 131 | 5.6 | 133 | 5.6 | 150 | 5.6 | 118 | 5.0 |
E | Amino acid transport and metabolism | 274 | 7.9 | 337 | 5.5 | 304 | 8.1 | 403 | 8.2 | 174 | 7.4 | 188 | 7.9 | 202 | 7.6 | 170 | 7.2 |
F | Nucleotide transport and metabolism | 77 | 2.2 | 98 | 1.6 | 82 | 2.2 | 91 | 1.9 | 79 | 3.4 | 78 | 3.3 | 82 | 3.1 | 80 | 3.4 |
H | Coenzyme transport and metabolism | 145 | 4.2 | 295 | 4.8 | 156 | 4.1 | 207 | 4.2 | 136 | 5.8 | 136 | 5.7 | 125 | 4.7 | 126 | 5.4 |
I | Lipid transport and metabolism | 113 | 3.3 | 478 | 7.8 | 134 | 3.6 | 168 | 3.4 | 91 | 3.9 | 88 | 3.7 | 93 | 3.5 | 78 | 3.3 |
P | Inorganic ion transport and metabolism | 166 | 4.8 | 244 | 4.0 | 171 | 4.5 | 261 | 5.3 | 136 | 5.8 | 143 | 6.0 | 141 | 5.3 | 136 | 5.8 |
Q | Secondary metabolites biosynthesis, transport and catabolism | 58 | 1.7 | 322 | 5.2 | 65 | 1.7 | 94 | 1.9 | 40 | 1.7 | 43 | 1.8 | 46 | 1.7 | 36 | 1.5 |
R | General function prediction only | 233 | 6.7 | 571 | 9.3 | 285 | 7.6 | 348 | 7.1 | 183 | 7.8 | 184 | 7.7 | 197 | 7.4 | 164 | 7.0 |
S | Function unknown | 107 | 3.1 | 224 | 3.6 | 138 | 3.7 | 217 | 4.4 | 139 | 5.9 | 143 | 6.0 | 156 | 5.9 | 128 | 5.4 |
- | Not in COGs | 1251 | 36.1 | 2298 | 37.3 | 1259 | 33.5 | 1400 | 28.6 | 695 | 29.5 | 674 | 28.3 | 884 | 33.2 | 742 | 31.6 |