Microbacterium sp. H83 | Mycobacterium iranicum H39 | Plantibacter sp. H53 | Pseudomonas oryzihabitans H72 | Staphylococcus capitis H36 | S. capitis H65 | S. cohnii H62 | S. hominis H69 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Attribute | Value | %a | Value | % | Value | % | Value | % | Value | % | Value | % | Value | % | Value | % |
Genome size (bp) | 3,531,197 | 100 | 6,470,840 | 100 | 4,012,045 | 100 | 5,316,471 | 100 | 2,412,840 | 100 | 2,482,551 | 100 | 2,656,939 | 100 | 2,335,200 | 100 |
DNA coding (bp) | 3,256,592 | 92 | 5,997,369 | 93 | 3,678,027 | 92 | 4,723,080 | 89 | 2,064,637 | 86 | 2,146,765 | 86 | 2,213,412 | 83 | 2,024,342 | 87 |
DNA G + C (bp) | 2,459,099 | 70 | 4,277,463 | 66 | 2,783,137 | 69 | 3,459,720 | 65 | 789,696 | 33 | 812,206 | 33 | 859,087 | 32 | 733,146 | 31 |
DNA scaffolds/contigs | 52 | 100 | 91 | 100 | 50 | 100 | 78 | 100 | 24 | 100 | 31 | 100 | 262 | 100 | 143 | 100 |
Total genes | 3522 | 100 | 6227 | 100 | 3826 | 100 | 5005 | 100 | 2454 | 100 | 2476 | 100 | 2761 | 100 | 2450 | 100 |
Protein coding genes | 3462 | 98 | 6162 | 99 | 3763 | 98 | 4897 | 98 | 2355 | 96 | 2378 | 96 | 2666 | 97 | 2350 | 96 |
RNA genes | 60 | 2 | 65 | 1 | 63 | 2 | 108 | 2 | 99 | 4 | 98 | 4 | 95 | 3 | 100 | 4 |
Pseudo genes | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Genes in internal clusters | 874 | 25 | 2189 | 35 | 1075 | 28 | 1487 | 30 | 451 | 18 | 456 | 18 | 593 | 21 | 464 | 19 |
Genes with function prediction | 2637 | 75 | 4691 | 75 | 2943 | 77 | 3969 | 79 | 1970 | 80 | 1970 | 80 | 2151 | 78 | 1907 | 78 |
Genes assigned to COGs | 2271 | 64 | 3929 | 63 | 2567 | 67 | 3605 | 72 | 1759 | 72 | 1802 | 73 | 1877 | 68 | 1708 | 70 |
Genes with Pfam domains | 2783 | 79 | 4989 | 80 | 3093 | 81 | 4209 | 84 | 2044 | 83 | 2057 | 83 | 2231 | 81 | 1979 | 81 |
Genes with signal peptides | 148 | 4 | 366 | 6 | 164 | 4 | 496 | 10 | 67 | 3 | 70 | 3 | 55 | 2 | 95 | 3 |
Genes with transmembrane helices | 953 | 27 | 1365 | 22 | 1117 | 29 | 1138 | 23 | 637 | 26 | 632 | 26 | 671 | 24 | 575 | 23 |
CRISPR repeats | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |