Table 5 Numbers of genes associated with the 25 general COG functional categories
From: Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34
Code | Value | % agea | Description |
|---|---|---|---|
J | 159 | 4.34 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 136 | 3.71 | Transcription |
L | 226 | 6.17 | Replication, recombination and repair |
B | 4 | 0.11 | Chromatin structure and dynamics |
D | 27 | 0.74 | Cell cycle control, Cell division, chromosome partitioning |
V | 27 | 0.74 | Defense mechanisms |
T | 104 | 2.84 | Signal transduction mechanisms |
M | 68 | 1.86 | Cell wall/membrane biogenesis |
N | 28 | 0.76 | Cell motility |
U | 30 | 0.82 | Intracellular trafficking and secretion |
O | 111 | 3.03 | Posttranslational modification, protein turnover, chaperones |
C | 156 | 4.26 | Energy production and conversion |
G | 113 | 3.08 | Carbohydrate transport and metabolism |
E | 227 | 6.19 | Amino acid transport and metabolism |
F | 73 | 1.99 | Nucleotide transport and metabolism |
H | 122 | 3.33 | Coenzyme transport and metabolism |
I | 62 | 1.69 | Lipid transport and metabolism |
P | 146 | 3.98 | Inorganic ion transport and metabolism |
Q | 33 | 0.90 | Secondary metabolites biosynthesis, transport and catabolism |
Z | 0 | 0.00 | Cytoskeleton |
W | 0 | 0.00 | Extracellular structures |
Y | 0 | 0.00 | Nuclear structure |
R | 362 | 9.88 | General function prediction only |
S | 214 | 5.84 | Function unknown |
- | 1439 | 39.26 | Not in COGs |