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Table 5 Numbers of genes associated with the 25 general COG functional categories

From: Complete genome sequence of the Antarctic Halorubrum lacusprofundi type strain ACAM 34

Code Value % agea Description
J 159 4.34 Translation, ribosomal structure and biogenesis
A 0 0.00 RNA processing and modification
K 136 3.71 Transcription
L 226 6.17 Replication, recombination and repair
B 4 0.11 Chromatin structure and dynamics
D 27 0.74 Cell cycle control, Cell division, chromosome partitioning
V 27 0.74 Defense mechanisms
T 104 2.84 Signal transduction mechanisms
M 68 1.86 Cell wall/membrane biogenesis
N 28 0.76 Cell motility
U 30 0.82 Intracellular trafficking and secretion
O 111 3.03 Posttranslational modification, protein turnover, chaperones
C 156 4.26 Energy production and conversion
G 113 3.08 Carbohydrate transport and metabolism
E 227 6.19 Amino acid transport and metabolism
F 73 1.99 Nucleotide transport and metabolism
H 122 3.33 Coenzyme transport and metabolism
I 62 1.69 Lipid transport and metabolism
P 146 3.98 Inorganic ion transport and metabolism
Q 33 0.90 Secondary metabolites biosynthesis, transport and catabolism
Z 0 0.00 Cytoskeleton
W 0 0.00 Extracellular structures
Y 0 0.00 Nuclear structure
R 362 9.88 General function prediction only
S 214 5.84 Function unknown
- 1439 39.26 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the annotated genome