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Table 3 Genome statistics

From: Complete genome sequences of the Serratia plymuthica strains 3Rp8 and 3Re4-18, two rhizosphere bacteria with antagonistic activity towards fungal phytopathogens and plant growth promoting abilities

  3Rp8 3Re4-18
Attribute Value % of Totala Value % of Totala
Genome size (bp) 5,546,041 100.00 5,439,574 100.00
DNA coding (bp) 4,745,098 85.56 4,683,982 86.11
DNA G + C (bp) 3,109,696 56.07 3,058,992 56.24
DNA scaffolds 1 - 1 -
Total genes 5130 100.00 5005 100.00
Protein coding genes 4954 96.57 4845 96.80
RNA genes 108 2.11 109 2.18
Pseudo genes 68 1.33 51 1.02
Genes in internal clusters NA - NA -
Genes with function prediction 4278 83.39 4239 84.70
Genes assigned to COGs 4077 79.47 4017 80.26
Genes with Pfam domains 3829 74.64 3780 75.52
Genes with signal peptides 499 9.73 489 9.77
Genes with transmembrane helices 1239 24.15 1213 24.24
CRISPR repeats 0 0 0 0
  1. aThe total is based on either the size of the genome in base pairs or the total number of genes in the annotated genome