Table 3 Genome statistics
3Rp8 | 3Re4-18 | |||
|---|---|---|---|---|
Attribute | Value | % of Totala | Value | % of Totala |
Genome size (bp) | 5,546,041 | 100.00 | 5,439,574 | 100.00 |
DNA coding (bp) | 4,745,098 | 85.56 | 4,683,982 | 86.11 |
DNA G + C (bp) | 3,109,696 | 56.07 | 3,058,992 | 56.24 |
DNA scaffolds | 1 | - | 1 | - |
Total genes | 5130 | 100.00 | 5005 | 100.00 |
Protein coding genes | 4954 | 96.57 | 4845 | 96.80 |
RNA genes | 108 | 2.11 | 109 | 2.18 |
Pseudo genes | 68 | 1.33 | 51 | 1.02 |
Genes in internal clusters | NA | - | NA | - |
Genes with function prediction | 4278 | 83.39 | 4239 | 84.70 |
Genes assigned to COGs | 4077 | 79.47 | 4017 | 80.26 |
Genes with Pfam domains | 3829 | 74.64 | 3780 | 75.52 |
Genes with signal peptides | 499 | 9.73 | 489 | 9.77 |
Genes with transmembrane helices | 1239 | 24.15 | 1213 | 24.24 |
CRISPR repeats | 0 | 0 | 0 | 0 |