Table 5 Number of strain-specific genes with general COG functional categories
From: Whole genome shotgun sequence of Bacillus amyloliquefaciens TF28, a biocontrol entophytic bacterium
Code | Value | %age | Description |
|---|---|---|---|
J | 2 | 0.99 | Translation,ribosomal structure and biogenesis |
A | 0 | 0 | RNA processing and modification |
K | 5 | 2.49 | Transcription |
L | 4 | 1.99 | Replication, recombination and repair |
D | 5 | 2.49 | Cell cycle control, Cell division, chromosome partitioning |
V | 9 | 4.48 | Defense mechanisms |
T | 7 | 3.48 | Signal transduction mechanisms |
N | 1 | 0.49 | Cell motility |
C | 3 | 1.49 | Energy production and conversion |
G | 14 | 6.97 | Carbohydrate transport and metabolism |
E | 8 | 3.98 | Amino acid transport and metabolism |
F | 4 | 1.99 | Nucleotide transport and metabolism |
H | 6 | 2.99 | Coenzyme transport and metabolism |
I | 1 | 0.49 | Lipid transport and metabolism |
P | 1 | 0.49 | Inorganic ion transport and metabolism |
Q | 1 | 0.49 | Secondary metabolites biosynthesis, transport and catabolism |
R | 9 | 4.48 | General function prediction only |
S | 3 | 1.49 | Function unknown |
- | 116 | 57.71 | Not in COGs |