Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3T)

Key, Trent A.; Richmond, Dray P.; Bowman, Kimberly S.; Cho, Yong-Joon; Chun, Jongsik; da Costa, Milton S.; Rainey, Fred A.; Moe, William M.

doi:10.1186/s40793-016-0165-7

Environmental Microbiome

Table 5 Characteristics of putative reductive dehalogenases (rdhA) of Dehalogenimonas alkenigignens IP3-3^T

From: Genome sequence of the organohalide-respiring Dehalogenimonas alkenigignens type strain (IP3-3^T)

Locus tag	ORF size (bp)	mol% G + C	Protein size (aa)	TAT Signal Sequence	Fe-S binding motif #1	Fe-S binding motif #2	Cognate rdhB	Closest homolog
Locus tag	ORF size (bp)	mol% G + C	Protein size (aa)	TAT Signal Sequence	Fe-S binding motif #1	Fe-S binding motif #2	Cognate rdhB	Accession/locus tag	Identity	Size (aa)
DEALK_00310	1344	44.64	447	-	CX₂CX₂CX₃C	CX₁₀CX₂CX₃C	None	DET0876	38 %	510
DEALK_00330	1584	45.58	527	+	CX₂CX₂CX₃C	CX₁₁CX₂CX₃C	None	GY50_1378	38 %	508
DEALK_01520	1566	58.88	521	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	None	DGWBC_1268	43 %	500
DEALK_04890	1593	50.03	530	+	CX₂CX₂CX₃C	CX₈CX₄CX₃C	None	DGWBC_1769	81 %	531
DEALK_05980	1515	62.44	504	+	CX₂CX₂CX₃C	CX₂CX₃C	None	DGWBC_1268	42 %	500
DEALK_05990	1542	59.27	513	+	CX₂CX₂CX₃C	CX₁₂CX₂CX₃C	None	BAI47820.1	60 %	490
DEALK_06000	1518	58.56	505	+	CX₂CX₂CX₃C	CX₁₂CX₂CX₃C	None	BAI47820.1	59 %	490
DEALK_06060	1416	59.82	471	+	CX₂CX₂CX₃C	CX₉CX₄CX₃C	None	Dehly_0849	68 %	475
DEALK_06310	1422	54.57	473	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	None	DhcVS_1421	63 %	475
DEALK_06360	1527	58.74	508	+	CX₂CX₂CX₃C	CX₁₂CX₂CX₃C	None	DGWBC_1268	44 %	500
DEALK_07340	1398	59.73	465	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	AGY79010.1	63 %	413
DEALK_07360	1398	54.01	465	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	Dehly_1582	75 %	452
DEALK_08250	1575	52.38	524	+	CX₂CX₂CX₃C	CX₁₀CX₂CX₃C	None	X793_01190	45 %	514
DEALK_08260	1566	56.64	521	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	None	X793_01190	42 %	514
DEALK_08270	1518	50.00	505	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	DGWBC_1584	77 %	502
DEALK_11210	1404	56.91	467	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	Dehly_0121	69 %	469
DEALK_11290	1527	61.03	508	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	DEALK_11280	BAG72164.1	42 %	504
DEALK_11300	1416	56.64	471	+	CX₂CX₂CX₃C	CX₂CX₂CX₃C	None	AGY79025.1	75 %	367
DEALK_11330	1401	59.10	466	+	CX₂CX₂CX₃C	CX₂CX₂CX₃C	None	AGY79025.1	77 %	367
DEALK_11430	1575	53.14	524	+	CX₂CX₂CX₃C	CX₁₀CX₂CX₃C	None	X793_01190	44 %	514
DEALK_16100	1386	55.27	461	+	CX₂CX₂CX₃C	CX₉CX₄CX₃C	None	Dehly_0068	69 %	460
DEALK_16320	1401	58.82	466	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	DGWBC_0119	74 %	474
DEALK_16330	1515	61.65	504	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	None	DGWBC_0120	80 %	502
DEALK_17120	1449	46.79	482	+	CX₂CX₂CX₃C	CX₈CX₂CX₃C	None	CEP66756.1	42 %	449
DEALK_17180	849	42.84	282	-	None	None	None	Dehly_1523	92 %	340
DEALK_17200	1455	44.47	484	+	CX₂CX₂CX₃C	CX₂CX₃C	DEALK_17210	AGS15112.1	95 %	484
DEALK_17450	1563	58.99	520	+	CX₂CX₂CX₃C	CX₉CX₂CX₃C	None	X793_01190	42 %	514
DEALK_17880	1641	60.69	546	+	CX₂CX₂CX₃C	CX₂CX₃C	None	DGWBC_1268	40 %	500
DEALK_19050	1506	50.60	501	+	CX₂CX₂CX₃C	CX₂CX₂CX₃C	DEALK_19040	DhcVS_96	61 %	496

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ISSN: 2524-6372

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