Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050T (DSM 19838T) and Gramella portivictoriae UST040801-001T (DSM 23547T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

Panschin, Irina; Huang, Sixing; Meier-Kolthoff, Jan P.; Tindall, Brian J.; Rohde, Manfred; Verbarg, Susanne; Lapidus, Alla; Han, James; Trong, Stephan; Haynes, Matthew; Reddy, T. B. K.; Huntemann, Marcel; Pati, Amrita; Ivanova, Natalia N.; Mavromatis, Konstantinos; Markowitz, Victor; Woyke, Tanja; Göker, Markus; Klenk, Hans-Peter; Kyrpides, Nikos C.; Hahnke, Richard L.

doi:10.1186/s40793-016-0163-9

Environmental Microbiome

Table 1 Classification and general features of G. echinicola DSM 19838^T and G. portivictoriae DSM 23547^T in accordance with the MIGS recommendations [60], as developed by [25], List of Prokaryotic names with Standing in Nomenclature [61, 62] and the Names for Life database [63]

From: Comparing polysaccharide decomposition between the type strains Gramella echinicola KMM 6050^T (DSM 19838^T) and Gramella portivictoriae UST040801-001^T (DSM 23547^T), and emended description of Gramella echinicola Nedashkovskaya et al. 2005 emend. Shahina et al. 2014 and Gramella portivictoriae Lau et al. 2005

MIGS ID	Property	DSM 19838^T		DSM 23547^T
		Term	Evidence code^a	Term	Evidence code^a
	Current	Domain Bacteria	TAS [64]	Domain Bacteria	TAS [64]
	classification	Phylum Bacteroidetes	TAS [65, 66]	Phylum Bacteroidetes	TAS [65, 66]
		Class Flavobacteriia	TAS [67, 68]	Class Flavobacteriia	TAS [67, 68]
		Order Flavobacteriales	TAS [4, 69]	Order Flavobacteriales	TAS [4, 69]
		Family Flavobacteriaceae	TAS [3, 4]	Family Flavobacteriaceae	TAS [3, 4]
		Genus Gramella	TAS [2]	Genus Gramella	TAS [2]
		Species Gramella echinicola	TAS [2]	Species Gramella portivictoriae	TAS [1]
		Type strain KMM 6050^T	TAS [2]	Type strain UST040801-001^T	TAS [1]
	Gram-stain	Negative	TAS [2]	Negative	TAS [1]
	Cell shape	Rod-shaped	TAS [2]	Rod-shaped	TAS [1]
	Motility	Motile, gliding	TAS [2]	Motile, gliding	TAS [1]
	Sporulation	Non-spore forming	TAS [2]	Non-spore forming	TAS [1]
	Temperature range	Mesophilic, 4–37 °C	TAS [2]	Mesophilic, 4–36 °C	TAS [1]
	Optimum temperature	23–25 °C	TAS [2]	28–30 °C	TAS [1]
	pH range; optimum	4–11, 7–8	TAS [2]	6–10, 7–8	TAS [1]
MIGS-22	Oxygen requirement	Strictly aerobic	TAS [2]	Strictly aerobic	TAS [1]
	Carbon source	Carbohydrates, peptides	TAS [2]	Carbohydrates, peptides	TAS [1]
	Energy source	Chemoheterotroph	TAS [2]	Chemoheterotroph	TAS [1]
MIGS-6	Habitat	Marine, host, sea urchin	TAS [2]	Marine, sediment	TAS [1]
MIGS-6.3	Salinity (% NaCl, w/v)	1–15 %	TAS [2]	1–6 %	TAS [1]
MIGS-15	Biotic relationship	Commensal	TAS [2]	Free-living	TAS [1]
MIGS-14	Pathogenicity	Not reported	NAS	Not reported	NAS
	Biosafety level	1	TAS [70]	1	TAS [70]
MIGS-4	Geographic location	Troitsa Bay, Gulf of Peter the Great, Sea of Japan	TAS [2]	Victoria Harbour, Hong Kong	TAS [1]
MIGS-5	Sample collection time	1. Sep. 2002	NAS	Before 2005	NAS
MIGS-4.1	Latitude	42.64	NAS	22.31	NAS
MIGS-4.2	Longitude	131.10	NAS	114.12	NAS
	Depth	3 m	TAS [2]	not reported

^aEvidence codes - TAS traceable author statement (i.e., a direct report exists in the literature), NAS non-traceable author statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). Evidence codes are from the Gene Ontology project [71]

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ISSN: 2524-6372

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