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Table 4 Number of genes associated with general COG functional categories

From: Complete genome sequence of the haloalkaliphilic, obligately chemolithoautotrophic thiosulfate and sulfide-oxidizing γ-proteobacterium Thioalkalimicrobium cyclicum type strain ALM 1 (DSM 14477T)

Code Value %age Description
J 153 9.7 Translation, ribosomal structure and biogenesis
A 1 0.1 RNA processing and modification
K 71 4.5 Transcription
L 86 5.4 Replication, recombination and repair
B 0 0.0 Chromatin structure and dynamics
D 27 1.7 Cell cycle control, Cell division, chromosome partitioning
V 28 1.8 Defense mechanisms
T 48 3.0 Signal transduction mechanisms
M 117 7.4 Cell wall/membrane biogenesis
N 12 0.8 Cell motility
U 56 3.5 Intracellular trafficking and secretion
O 88 5.6 Posttranslational modification, protein turnover, chaperones
C 95 6.0 Energy production and conversion
G 59 3.7 Carbohydrate transport and metabolism
E 123 7.8 Amino acid transport and metabolism
F 49 3.1 Nucleotide transport and metabolism
H 109 6.9 Coenzyme transport and metabolism
I 40 2.5 Lipid transport and metabolism
P 89 5.6 Inorganic ion transport and metabolism
Q 26 1.6 Secondary metabolites biosynthesis, transport and catabolism
R 170 10.8 General function prediction only
S 135 8.5 Function unknown
- 275 15.9 Not in COGs
  1. The total is based on the total number of protein coding genes in the genome