Table 4 Number of genes of sp. PC2 associated with general COG functional categories
Code | Value | %age of total (5,205) | Description |
|---|---|---|---|
J | 236 | 4.01 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 514 | 8.74 | Transcription |
L | 172 | 2.92 | Replication, recombination and repair |
B | 2 | 0.03 | Chromatin structure and dynamics |
D | 47 | 0.80 | Cell cycle control, cell division, chromosome partitioning |
Y | 0 | 0.00 | Nuclear structure |
V | 115 | 1.95 | Defense mechanisms |
T | 271 | 4.61 | Signal transduction mechanisms |
M | 331 | 5.63 | Cell wall/membrane/envelope biogenesis |
N | 101 | 1.72 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | 44 | 0.75 | Extracellular structures |
U | 132 | 2.24 | Intracellular trafficking, secretion, and vesicular transport |
O | 213 | 3.62 | Posttranslational modification, protein turnover, chaperones |
C | 351 | 5.97 | Energy production and conversion |
G | 548 | 9.31 | Carbohydrate transport and metabolism |
E | 598 | 10.16 | Amino acid transport and metabolism |
F | 116 | 1.97 | Nucleotide transport and metabolism |
H | 277 | 4.71 | Coenzyme transport and metabolism |
I | 227 | 3.86 | Lipid transport and metabolism |
P | 309 | 5.25 | Inorganic ion transport and metabolism |
Q | 171 | 2.91 | Secondary metabolite biosynthesis, transport and catabolism |
R | 593 | 10.08 | General function prediction only |
S | 395 | 6.71 | Function unknown |
X | 120 | 2.04 | Mobilome: prophages, transposons |
- | 3,278 | 38.64 | Not in COGS |