Table 3 Genome statistics (Prokka)
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 2,8883,49 | 100.0 |
DNA coding (bp) | 2,567,900 | 88.9 |
DNA G + C (bp) | 1,559,709 | 54.0 |
DNA scaffolds | 69 | 100.0 |
Total genes | 2,924 | 100.0 |
Protein coding genes | 2,872 | 98.2 |
RNA genes | 52 | 1.8 |
Pseudo genes | - | - |
Genes in internal clusters | - | - |
Genes with function prediction | 2,249 | 76.9 |
Genes assigned to COGs | 2,207 | 75.5 |
Genes with Pfam domains | 2,069 | 70.8 |
Genes with signal peptides | 208 | 7.1 |
Genes with transmembrane helices | 619 | 21.6 |
CRISPR repeats | 0 | 0.0 |