High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409T with an incomplete denitrification pathway

Table 3 Genome statistics

Attribute	Value	% of Total^a
Genome size (bp)	2,160,855	100.0
DNA coding (bp)	2,031,100	94.0
DNA G + C (bp)	1,457,281	67.4
DNA scaffolds	6	100.0
Total genes	2,313	100.0
Protein coding genes	2,257	97.6
RNA genes	56	2.4
Pseudo genes^b	74	3.2
Genes in internal clusters	1,932	83.5
Genes with function prediction	1,839	79.5
Genes assigned to COGs	1,558	67.4
Genes with Pfam domains	1,842	79.6
Genes with signal peptides	110	4.8
Genes with transmembrane helices	439	19.0
CRISPR repeats	5

^aThe total is based on either the size of the genome in base pairs or the total number of protein coding genes in the annotated genome
^bPseudogenes may also be counted as protein coding or RNA genes, so is not additive under total gene count

ISSN: 2524-6372