Table 4 Number of genes associated with the 25 general KOG functional categories
Species | K. capensis | K. proteae | |||
|---|---|---|---|---|---|
Code | Value | % of totala | Value | % of totala | Description |
J | 359 | 4.52 | 371 | 4.54 | Translation, ribosomal structure and biogenesis |
A | 280 | 3.53 | 273 | 3.34 | RNA processing and modification |
K | 475 | 5.98 | 484 | 5.92 | Transcription |
L | 196 | 2.47 | 198 | 2.42 | Replication, recombination and repair |
B | 109 | 1.37 | 99 | 1.21 | Chromatin structure and dynamics |
D | 209 | 2.63 | 227 | 2.78 | Cell cycle control, cell division, chromosome partitioning |
Y | 34 | 0.43 | 32 | 0.39 | Nuclear structure |
V | 32 | 0.40 | 32 | 0.39 | Defence mechanisms |
T | 505 | 6.36 | 586 | 5.95 | Signal transduction mechanisms |
M | 69 | 0.87 | 76 | 0.93 | Cell wall/membrane/envelope biogenesis |
N | 6 | 0.08 | 6 | 0.07 | Cell motility |
Z | 279 | 3.51 | 289 | 3.54 | Cytoskeleton |
W | 10 | 0.13 | 12 | 0.15 | Extracellular structures |
U | 539 | 6.79 | 543 | 6.64 | Intracellular trafficking, secretion, and vesicular transport |
O | 502 | 6.32 | 495 | 6.06 | Post-translational modification, protein turnover, chaperones |
C | 265 | 3.34 | 256 | 3.13 | Energy production and conversion |
G | 202 | 2.54 | 202 | 2.47 | Carbohydrate transport and metabolism |
E | 227 | 2.86 | 228 | 2.79 | Amino acid transport and metabolism |
F | 76 | 0.96 | 74 | 0.91 | Nucleotide transport and metabolism |
H | 87 | 1.10 | 85 | 1.04 | Coenzyme transport and metabolism |
I | 234 | 2.95 | 234 | 2.86 | Lipid transport and metabolism |
P | 144 | 1.81 | 151 | 1.85 | Inorganic ion transport and metabolism |
Q | 139 | 1.75 | 137 | 1.68 | Secondary metabolites biosynthesis, transport and catabolism |
R | 735 | 9.26 | 694 | 8.49 | General function prediction only |
S | 344 | 4.33 | 330 | 4.04 | Function unknown |
X | 2 | 0.03 | 1 | 0.01 | Multiple functions |
- | 1881 | 23.69 | 2159 | 26.41 | Not in KOGs |