Table 4 Number of genes associated with general COG functional categories

J

218

5.13

217

6.70

Translation, ribosomal structure and biogenesis

A

1

0.02

2

0.06

RNA processing and modification

K

193

4.54

199

6.15

Transcription

L

111

2.61

127

3.92

Replication, recombination and repair

B

1

0.02

1

0.03

Chromatin structure and dynamics

D

35

0.82

40

1.23

Cell cycle control, cell division, chromosome partitioning

V

63

1.48

68

2.10

Defense mechanisms

T

211

4.96

208

6.42

Signal transduction mechanisms

M

225

5.29

235

7.26

Cell wall/membrane biogenesis

N

114

2.68

119

3.67

Cell motility

Z

2

0.05

2

0.06

Cytoskeleton

W

2

0.05

2

0.06

Extracellular structures

U

69

1.62

81

2.50

Intracellular trafficking and secretion

O

160

3.76

171

5.28

Posttranslational modification, protein turnover, chaperones

C

184

4.33

173

5.34

Energy production and conversion

G

220

5.18

215

6.64

Carbohydrate transport and metabolism

E

225

5.29

239

7.38

Amino acid transport and metabolism

F

76

1.79

76

2.35

Nucleotide transport and metabolism

H

153

3.60

144

4.45

Coenzyme transport and metabolism

I

156

3.67

156

4.82

Lipid transport and metabolism

P

218

5.13

212

6.55

Inorganic ion transport and metabolism

Q

57

1.34

63

1.95

Secondary metabolites biosynthesis, transport and catabolism

R

223

5.25

223

6.89

General function prediction only

S

213

5.01

223

6.89

Function unknown

X

7

0.16

41

1.27

Mobilome: prophages, transposons

-

1113

26.19

1483

31.42

Not in COGs