Table 4 Number of genes associated with general COG functional categories
From: Genome sequence of Shinella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna
Code | Value | % age | Description |
|---|---|---|---|
J | 206 | 3.07 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 666 | 9.92 | Transcription |
L | 259 | 3.86 | Replication, recombination and repair |
B | 7 | 0.10 | Chromatin structure and dynamics |
D | 52 | 0.77 | Cell cycle control, Cell division, chromosome partitioning |
V | 65 | 0.97 | Defense mechanisms |
T | 334 | 4.97 | Signal transduction mechanisms |
M | 261 | 3.89 | Cell wall/membrane biogenesis |
N | 88 | 1.31 | Cell motility |
U | 111 | 1.65 | Intracellular trafficking and secretion |
O | 177 | 2.64 | Posttranslational modification, protein turnover, chaperones |
C | 338 | 5.03 | Energy production and conversion |
G | 605 | 9.01 | Carbohydrate transport and metabolism |
E | 955 | 14.22 | Amino acid transport and metabolism |
F | 130 | 1.94 | Nucleotide transport and metabolism |
H | 226 | 3.37 | Coenzyme transport and metabolism |
I | 218 | 3.25 | Lipid transport and metabolism |
P | 407 | 6.06 | Inorganic ion transport and metabolism |
Q | 194 | 2.89 | Secondary metabolites biosynthesis, transport and catabolism |
R | 781 | 11.63 | General function prediction only |
S | 634 | 9.44 | Function unknown |
- | 1535 | 20.32 | Not in COGs |