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Table 1 Classification and general features of Pseudomonas chlororaphis UFB2 according to the MIGS recommendations [55]

From: Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato

MIGS ID Property Term Evidence codea
  Classification Domain Bacteria TAS [56]
   Phylum Proteobacteria TAS [57]
   Class Gammaproteobacteria TAS [58, 59]
   Order Pseudomonadales TAS [19, 60]
   Family Pseudomonadaceae TAS [19, 61]
   Genus Pseudomonas TAS [19, 6163]
   Species Pseudomonas chlororaphis TAS [19, 64, 65]
   strain: UFB2 NAS
  Gram stain negative TAS [66]
  Cell shape Rod TAS [66]
  Motility Motile TAS [66]
  Sporulation None NAS
  Temperature range Mesophilic IDA
  Optimum temperature 33 °C IDA
  pH range; Optimum not determined IDA
  Carbon source D-glucose, D-galactose, L-rhamnose, D-mannitol, D-raffinose, D-fructose, D-arabinose, 2D-ribose, L-arabinose, L-xylose, D-xylose. TAS [66]
MIGS-6 Habitat Soil NAS
MIGS-6.3 Salinity not determined IDA
MIGS-22 Oxygen requirement Aerobic NAS
MIGS-15 Biotic relationship free-living/Rhizospheric NAS
MIGS-14 Pathogenicity non-pathogen IDA
MIGS-4 Geographic location Mississippi, USA IDA
MIGS-5 Sample collection 2011 IDA
MIGS-4.1 Latitude 34.1 N IDA
MIGS-4.2 Longitude 90.6 W IDA
MIGS-4.4 Altitude 40 M IDA
  1. aEvidence codes - IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [67]