Skip to main content

Table 1 Classification and general features of Pseudomonas chlororaphis UFB2 according to the MIGS recommendations [55]

From: Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato

MIGS ID

Property

Term

Evidence codea

 

Classification

Domain Bacteria

TAS [56]

  

Phylum Proteobacteria

TAS [57]

  

Class Gammaproteobacteria

TAS [58, 59]

  

Order Pseudomonadales

TAS [19, 60]

  

Family Pseudomonadaceae

TAS [19, 61]

  

Genus Pseudomonas

TAS [19, 61–63]

  

Species Pseudomonas chlororaphis

TAS [19, 64, 65]

  

strain: UFB2

NAS

 

Gram stain

negative

TAS [66]

 

Cell shape

Rod

TAS [66]

 

Motility

Motile

TAS [66]

 

Sporulation

None

NAS

 

Temperature range

Mesophilic

IDA

 

Optimum temperature

33 °C

IDA

 

pH range; Optimum

not determined

IDA

 

Carbon source

D-glucose, D-galactose, L-rhamnose, D-mannitol, D-raffinose, D-fructose, D-arabinose, 2D-ribose, L-arabinose, L-xylose, D-xylose.

TAS [66]

MIGS-6

Habitat

Soil

NAS

MIGS-6.3

Salinity

not determined

IDA

MIGS-22

Oxygen requirement

Aerobic

NAS

MIGS-15

Biotic relationship

free-living/Rhizospheric

NAS

MIGS-14

Pathogenicity

non-pathogen

IDA

MIGS-4

Geographic location

Mississippi, USA

IDA

MIGS-5

Sample collection

2011

IDA

MIGS-4.1

Latitude

34.1 N

IDA

MIGS-4.2

Longitude

90.6 W

IDA

MIGS-4.4

Altitude

40 M

IDA

  1. aEvidence codes - IDA Inferred from Direct Assay, TAS Traceable Author Statement (i.e., a direct report exists in the literature), NAS Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from the Gene Ontology project [67]