Table 3 Genome statistics
Attribute | Value | % of total |
|---|---|---|
Genome size (bp) | 6,535,606 | 100.00 |
DNA coding (bp) | 5,330,283 | 81.56 |
DNA G + C (bp) | 4,076,257 | 62.37 |
DNA scaffolds | 114 | 100.00 |
Total genes | 5,876 | 100.00 |
Protein coding genes | 5,362 | 91.25 |
RNA genes | 106 | 1.80 |
Pseudo-genes | 408 | 6.94 |
Genes in internal clusters | 2,639 | 44.91 |
Genes with predicted functions | 3,978 | 67.69 |
Genes assigned to COGs | 4,181 | 79.94 |
Genes with Pfam domains | 4,268 | 79.59 |
Genes with signal peptides | 1,250 | 21.27 |
Genes with transmembrane helices | 1,065 | 18.12 |
CRISPR repeats | 0 | 0.00 |