Table 3 Genome statistics based on the IMG Annotation Pipeline
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 3,507,875 | 100.00 |
DNA coding (bp) | 3,136,266 | 89.41 |
DNA G + C (bp) | 1,986,943 | 56.64 |
DNA scaffolds | 290 | 100.00 |
Total genes | 3526 | 100.00 |
Protein coding genes | 3397 | 96.34 |
RNA genes | 129 | 3.66 |
Pseudo genes | 0 | 0.00 |
Genes in internal clusters | 2549 | 72.29 |
Genes with function prediction | 2887 | 81.88 |
Genes assigned to COGs | 2469 | 70.02 |
Genes with Pfam domains | 2945 | 83.52 |
Genes with signal peptides | 259 | 7.35 |
Genes with transmembrane helices | 811 | 23.00 |
CRISPR repeats | 0 | 0 |