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Table 6 Associated MIGS record

From: High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237

MIGS-ID field name description description
Strain   Afadé B237
MIGS-1 Submit to INSDC/Trace archives LAEX00000000 LAEW00000000
 1.1 PID PRJNA272471 PRJNA272775
 1.2 Trace Archive   
MIGS-2 MIGS CHECK LIST TYPE   
MIGS-3 Project Name High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237 High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237
MIGS-4 Geographic Location Cameroon Kenya
 4.1 Latitude not reported 01°03′S
 4.2 Longitude not reported 37°05′E
 4.3 Depth na na
 4.4 Altitude not reported 1631 m
MIGS-5 Time of Sample collection not reported not reported
MIGS-6 Habitat (EnvO) Respiratory tract Respiratory tract
 6.1 temperature 38.5 38.5
 6.2 pH 6.5–8.5 6.5–8.5
 6.3 salinity 0.09 % 0.09 %
 6.4 chlorophyll na na
 6.5 conductivity na na
 6.6 light intensity na na
 6.7 dissolved organic carbon (DOC) na na
 6.8 current na na
 6.9 atmospheric data na na
 6.1 density na na
 6.11 alkalinity na na
 6.12 dissolved oxygen na na
 6.13 particulate organic carbon (POC) na na
 6.14 phosphate na na
 6.15 nitrate na na
 6.16 sulfates na na
 6.17 sulfides na na
 6.18 primary production na na
MIGS-7 Subspecific genetic lineage strain strain
MIGS-9 Number of replicons 1 1
MIGS-10 Extrachromosomal elements none none
MIGS-11 Estimated Size 1.2 MB 1.2 Mb
MIGS-12 Reference for biomaterial or Genome report primary genome report primary genome report
MIGS-13 Source material identifiers   
MIGS-14 Known Pathogenicity Contagious Bovine Pleuropneumonia Contagious Bovine Pleuropneumonia
MIGS-15 Biotic Relationship obligate parasite obligate parasite
MIGS-16 Specific Host Cattle Cattle
MIGS-17 Host specificity or range (taxid) 9903 9903
MIGS-18 Health status of Host Sick Sick
MIGS-19 Trophic Level heterotroph heterotroph
MIGS-22 Relationship to Oxygen anaerobic anaerobic
MIGS-23 Isolation and Growth conditions optional: reference may be provided if applicable optional: reference may be provided if applicable
MIGS-27 Nucleic acid preparation   
MIGS-28 Library construction   
 28.1 Library size   
 28.2 Number of reads   
 28.3 vector   
MIGS-29 Sequencing method Illumina Miseq 300PE and PacBio PacBio
MIGS-30 Assembly   
 30.1 Assembly method Celera assembler v7.0 Celera assembler v7.0
 30.2 estimated error rate   
 30.3 method of calculation   
MIGS-31 Finishing strategy High-quality draft High-quality draft
 31.1 Status   
 31.2 coverage 25x 25x
 31.3 contigs 7 1
MIGS-32 Relevant SOPs   
MIGS-33 Relevant e-resources