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Table 5 Number of genes associated with the 25 general COG functional categories

From: High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237

Code Value % of totala Value % of totala Description
Strain Afadé B237  
J 141 12.19 139 12.01 Translation, ribosomal structure and biogenesis
A 0 0.00 0 0.00 RNA processing and modification
K 34 2.94 34 2.94 Transcription
L 50 4.32 50 4.32 Replication, recombination and repair
B 0 0.00 0 0.00 Chromatin structure and dynamics
D 9 0.78 8 0.69 Cell cycle control, Cell division, chromosome partitioning
Y 0 0.00 0 0.00 Nuclear structure
V 12 1.04 13 1.12 Defense mechanisms
T 15 1.30 15 1.30 Signal transduction mechanisms
M 27 2.34 33 2.85 Cell wall/membrane biogenesis
N 8 0.69 9 0.78 Cell motility
Z 0 0.00 0 0.00 Cytoskeleton
W 0 0.00 0 0.00 Extracellular structures
U 5 0.43 6 0.52 Intracellular trafficking and secretion
O 26 2.25 25 2.16 Posttranslational modification, protein turnover, chaperones
C 29 2.51 28 2.42 Energy production and conversion
G 71 6.14 70 6.05 Carbohydrate transport and metabolism
E 44 3.81 42 3.63 Amino acid transport and metabolism
F 32 2.77 32 2.77 Nucleotide transport and metabolism
H 30 2.60 29 2.51 Coenzyme transport and metabolism
I 14 1.21 14 1.21 Lipid transport and metabolism
P 39 3.37 48 4.15 Inorganic ion transport and metabolism
Q 1 0.09 1 0.09 Secondary metabolites biosynthesis, transport and catabolism
R 45 3.89 45 3.89 General function prediction only
S 6 0.52 6 0.52 Function unknown
- 101 8.74 105 9.08 Other COG categories
- 442 38.24 431 37.25 Not in COGs
  1. aThe total is based on the total number of protein coding genes in the annotated genome