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Table 7 Unique sequences in V. anguillarum NB10 identified by genome comparisons

From: Complete genome sequence of Vibrio anguillarum strain NB10, a virulent isolate from the Gulf of Bothnia

 

Base pairs

Size (kb)

CDSs

Chromosome 1

   

Prophage

   

 Intact

1,891,762…1,935,924

44.1

69

 Partial

2,964,881…2,973,261

8.3

8

Genomic Islands

   

 GI-1

34,299…47,256

12.9

12

 GI-2

104,658…109,015

4.3

5

 GI-3

138,956…147,914

8.9

12

 GI-4

288,556…298,943

10.3

15

 GI-5

445,355…487,284

41.9

37

 GI-6

494,899…502,274

7.3

5

 GI-7

681,585…709,820

28.2

27

 GI-8

942,447…952,116

9.6

9

 GI-9

1,572,019…1,589,186

17.1

13

 GI-10-13

1,891,012…1,937,302

46.2

61

 GI-14-17

2,864,895…2,925,178

60.2

54

 GI-18

2,938,796…2,955,240

16.4

17

 GI-19

2,994,229…3,011,196

16.9

14

Genome gaps a

   

 GG-A

820,080…832,800

12.7

12

 GG-B

1,888,140…1,934,940

46.8

76

 GG-C

2,938,440…2,951,880

13.4

13

Chromosome 2

   

Prophage

   

Questionable

401,647…447,433

45.7

22

Genomic Islands

   

 GI-20

286,348…292,555

6.2

5

 GI-21

392,736…414,906

22.1

22

 GI-22

431,537…439,839

8.3

12

 GI-23

464,750…469,836

5.1

5

 GI-24

473,125…479,299

6.1

10

 GI-25

546,066…578,220

32.1

35

 GI-26

639,559…674,888

35.3

24

 GI-27

682,155…688,431

6.2

6

 GI-28

711,800…720,165

8.3

6

 GI-29

738,270…755,649

17.3

10

Genome gaps a

   

 GG-D

292,140…294,360

1.9

3

 GG-E

396,120…417,780

21.6

13

 GG-F

489,780…500,880

11.1

19

 GG-G

557,580…571,320

13.7

11

 GG-H

643,380…673,560

34.0

22

 GG-I

682,320…756,540

74.2

53

 GG-J

971,280…981,740

10.5

9

  1. aGaps indicate regions of the NB10 genome that are not found in the genomes of strains 775 and M3 as detected by BLAST searches using the BRIG program [44]
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Environmental Microbiome

ISSN: 2524-6372