Table 4 Number genes associated with general COG functional categories
From: High-Quality draft genome sequence of the Lotus spp. microsymbiont Mesorhizobium loti strain CJ3Sym
Code | Value | % of total (5,809) | COG Category |
|---|---|---|---|
J | 234 | 4.03 | Translation, ribosomal structure and biogenesis |
A | 0 | 0.00 | RNA processing and modification |
K | 526 | 9.05 | Transcription |
L | 139 | 2.39 | Replication, recombination and repair |
B | 5 | 0.09 | Chromatin structure and dynamics |
D | 33 | 0.57 | Cell cycle control, Cell division, chromosome partitioning |
V | 124 | 2.13 | Defense mechanisms |
T | 216 | 3.72 | Signal transduction mechanisms |
M | 309 | 5.32 | Cell wall/membrane/envelope biogenesis |
N | 46 | 0.79 | Cell motility |
W | 32 | 0.55 | Extracellular structures |
U | 106 | 1.82 | Intracellular trafficking, secretion, and vesicular transport |
O | 205 | 3.53 | Posttranslational modification, protein turnover, chaperones |
C | 319 | 5.49 | Energy production and conversion |
G | 519 | 8.93 | Carbohydrate transport and metabolism |
E | 736 | 12.67 | Amino acid transport and metabolism |
F | 102 | 1.76 | Nucleotide transport and metabolism |
H | 274 | 4.72 | Coenzyme transport and metabolism |
I | 282 | 4.85 | Lipid transport and metabolism |
P | 286 | 4.92 | Inorganic ion transport and metabolism |
Q | 225 | 3.87 | Secondary metabolite biosynthesis, transport and catabolism |
R | 657 | 11.31 | General function prediction only |
S | 383 | 6.59 | Function unknown |
- | 2,327 | 31.44 | Not in COGS |