Table 3 Nucleotide content and gene count levels of the genome
Attribute | Value | % of Total |
|---|---|---|
Genome size (bp) | 5,286,918 | 100.00 |
DNA coding (bp) | 4,884,848 | 92.40 |
DNA G + C (bp) | 3,405,333 | 64.41 |
DNA scaffolds | 6 | 100.00 |
Total genes | 5,067 | 100.00 |
Protein coding genes | 4,998 | 98.64 |
RNA genes | 69 | 1.36 |
Pseudo genes | 60 | 1.18 |
Genes in internal clusters | NA | |
Genes with function prediction | 3,977 | 24.18 |
Genes assigned to COGs | 3,805 | 75.09 |
Genes with Pfam domains | 4,134 | 81.59 |
Genes with signal peptides | 370 | 7.30 |
Genes with transmembrane helices | 1,192 | 23.52 |
CRISPR repeats | 1 | - |