Table 5 Comparison of genome features of Acidiphilium sp. JA12-A1 to close relatives
From: Permanent draft genome sequence of Acidiphilium sp. JA12-A1
Genome features | Genome name | |||
|---|---|---|---|---|
A. cryptum JF-5a | A. multivorum AIU301b | Acidiphilium sp. PM DSM 24941c | Acidiphilium sp. JA12-A1d | |
Sequencing status | Finished | Finished | Draft | Permanent draft |
Genome size (Mbp) | 4.0 | 4.2 | 3.9 | 4.2 |
Number of plasmids | 8 | 8 | 9 | Not reported |
GC (percentage) | 67.1 % | 67.0 % | 66.4 % | 66.9 % |
Total gene count | 3,701 | 4,004 | 3,908 | 4,065 |
Number of CDS genes (percentage) | 3,637 (98.3 %) | 3,948 (98. 6 %) | 3,859 (98.8 %) | 4,015 (98.8 %) |
Number of RNA genes | 64 (1.7 %) | 56 (1.4 %) | 49 (1.3 %) | 50 (1.2 %) |
Number of genes assigned to COGs (percentage) | 2,830 (79.1 %) | 3,188 (76.5 %) | 3,116 (79.7 %) | 2,663 (65.5 %) |
Number of genes connected to KEGG pathways (percentage) | 1,197 (32.3 %) | 1,283 (32.0 %) | 1,133 (29.0 %) | 1,238 (30.5 %) |
Number of genes assigned to enzymes (percentage) | 1,055 (28.5 %) | 1,107 (27.7 %) | 965 (24.7 %) | 1,076 (26.5 %) |
Number of genes assigned to transporter classification (percentage) | 524 (14.1 %) | 562 (14.0 %) | 573 (14.7 %) | 520 (12.8 %) |
Number of genes coding transmembrane proteins (percentage) | 817 (22.1 %) | 880 (22.0 %) | 839 (21.5 %) | 857 (21.1 %) |
Number of genes with signal peptides (percentage) | 240 (6.5 %) | 266 (6.6 %) | 232 (5.9 %) | 268 (6.6 %) |