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Table 3 Nucleotide and gene count levels of the genome of P. putida SQ1

From: Permanent draft genome sequence of sulfoquinovose-degrading Pseudomonas putida strain SQ1

Attribute Genome (total)
  Value % of totala
Genome size (bp) 5,328,888 100.00
DNA coding 4,750,611 89.15
DNA G + C (bp) 3,281,384 61.58
DNA scaffolds 1,634 100.00
Total genes 5,925 100.00
Protein coding genes 5,824 98.30
RNA genes 101 1.70
rRNA operon count 9 0.15
Genes with function prediction 4,624 78.04
Genes in paralog clusters 4,497 75.90
Genes assigned to COGs 3,249 54.84
Genes with Pfam domains 4,781 80.69
Genes with signal peptides 535 9.03
Genes with transmembrane helices 1,270 21.43
CRISPR count 1  
  1. a) The total is based on either the size of the genome in base pairs or the total number of protein coding genes predicted in the annotated draft genome