High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae

Sizova, Maria V.; Chilaka, Amanda; Earl, Ashlee M.; Doerfert, Sebastian N.; Muller, Paul A.; Torralba, Manolito; McCorrison, Jamison M.; Durkin, A. Scott; Nelson, Karen E.; Epstein, Slava S.

doi:10.1186/s40793-015-0027-8

Environmental Microbiome

Table 1 Classification and general features of the five oral isolates according to the MIGS recommendation [34]

From: High-quality draft genome sequences of five anaerobic oral bacteria and description of Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae

MIGS ID	Property	Term					Evidence code^a
MIGS ID	Property	strain ACC19a	strain CM2	strain CM5	strain OBRC8	strain AS15	Evidence code^a
	Classification	Domain Bacteria	Domain Bacteria	Domain Bacteria	Domain Bacteria	Domain Bacteria	TAS [35]
		Phylum Firmicutes	Phylum Firmicutes	Phylum Firmicutes	Phylum Firmicutes	Phylum Firmicutes	TAS [36]
		Class Clostridia	Class Clostridia	Class Clostridia	Class Clostridia	Class Clostridia	TAS [36]
		Order Clostridiales	Order Clostridiales	Order Clostridiales	Order Clostridiales	Order Clostridiales	TAS [36]
		Family Peptostreptococcaceae	Family Peptostreptococcaceae	Family Peptostreptococcaceae	Family Peptostreptococcaceae	Family Peptostreptococcaceae	IDA
		Genus Peptoanaerobacter	Genus Peptoanaerobacter	Genus Peptoanaerobacter	Genus Peptoanaerobacter	Genus Eubacterium	IDA
		Species Peptoanaerobacter stomatis	Species Peptoanaerobacter stomatis	Species Peptoanaerobacter stomatis	Species Peptoanaerobacter stomatis	Species Eubacterium yurii subspecies margaretiae	IDA
		Type strain HM-483; DSM 28705; ATCC BAA-2665					TAS [10]
	Gram stain	Positive	Positive	Positive	Positive	Positive	IDA
	Cell shape	Rods with round ends	Rods with round ends	Rods with round ends	Rods with round ends	Rods with square ends, forms rosettes	IDA
	Cell size, μm	0.4-0.8 × 1.2-2.5	0.5-0.7 × 1.0-2.3	0.5-0.7 × 1.3-2.8	0.6-0.8 × 1.4-3.5	0.4-0.5 × 1.5-4.7	IDA
	Motility/Flagella	+/peritrichous	+/peritrichous	+/ peritrichous	+/ peritrichous	+/single subpolar	IDA
	Sporulation	Does not form spores	Does not form spores	Does not form spores	Does not form spores	Does not form spores	IDA
	Temperature range	30 – 42 ^oC	30 – 42 ^oC	30 – 42 ^oC	30 – 42 ^oC	30 – 42 ^oC	IDA
	Optimum temperature	37 °C	37 °C	37 °C	37 °C	37 °C	IDA
	pH range; Optimum	6.5-7.5; 7	6.5-7.5; 7	6.5-7.5; 7	6.5-7.5; 7	6.5-7.5; 7	IDA
	Carbon source	Yeast extract	Yeast extract, Glucose, Sucrose, Maltose	Yeast extract	Yeast extract, Glucose, Sucrose, Maltose	Yeast extract, Glucose, Sucrose, Maltose	IDA
MIGS-6	Habitat	Human oral cavity					TAS [10]
MIGS-6.3	Salinity	Normal					IDA
MIGS-22	Oxygen requirement	Strictly anaerobic					TAS [10]
MIGS-15	Biotic relationship	Free living					TAS [10]
MIGS-14	Pathogenicity	Non pathogen					TAS [10]
MIGS-4	Geographic location	Boston, Massachusetts, USA					TAS [10]
MIGS-5	Sample collection	March 1, 2010					TAS [10]
MIGS-4.1	Latitude	42.34					NAS
MIGS-4.2	Longitude	−71.09					NAS
MIGS-4.4	Altitude	5.8 m above see level					NAS

^aEvidence codes - IDA: Inferred from Direct Assay; TAS: Traceable Author Statement (i.e., a direct report exists in the literature); NAS: Non-traceable Author Statement (i.e., not directly observed for the living, isolated sample, but based on a generally accepted property for the species, or anecdotal evidence). These evidence codes are from Gene Ontology project [37, 38]

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ISSN: 2524-6372

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