Table 4 Number of genes associated with the 25 general COG functional categories
Code | Attribute | Strain | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
S1 | S12 | S17 | S18 | S19 | S32 | ||||||||
Value | % | Value | % | Value | % | Value | % | Value | % | Value | % | ||
J | Translation, ribosomal structure and biogenesis | 155 | 5.93 | 152 | 5.49 | 152 | 5.79 | 153 | 5.46 | 152 | 5.33 | 153 | 5.21 |
A | RNA processing and modification | - | - | - | - | - | - | - | - | - | - | - | - |
K | Transcription | 172 | 6.58 | 178 | 6.43 | 174 | 6.63 | 173 | 6.17 | 183 | 6.41 | 184 | 6.27 |
L | Replication, recombination and repair | 114 | 4.36 | 125 | 4.51 | 112 | 4.27 | 127 | 4.53 | 127 | 4.45 | 132 | 4.50 |
B | Chromatin structure and dynamics | - | - | - | - | - | - | - | - | - | - | - | - |
D | Cell cycle control, mitosis and meiosis | 22 | 0.84 | 25 | 0.90 | 22 | 0.84 | 21 | 0.75 | 23 | 0.81 | 24 | 0.82 |
Y | Nuclear structure | - | - | - | - | - | - | - | - | - | - | - | - |
V | Defense mechanisms | 56 | 2.14 | 45 | 1.63 | 51 | 1.94 | 46 | 1.64 | 46 | 1.61 | 54 | 1.84 |
T | Signal transduction mechanisms | 90 | 3.44 | 89 | 3.21 | 85 | 3.24 | 94 | 3.35 | 87 | 3.05 | 95 | 3.24 |
M | Cell wall/membrane biogenesis | 105 | 4.02 | 100 | 3.61 | 107 | 4.08 | 105 | 3.74 | 98 | 3.43 | 123 | 4.19 |
N | Cell motility | 10 | 0.38 | 10 | 0.36 | 11 | 0.42 | 9 | 0.32 | 12 | 0.42 | 12 | 0.41 |
Z | Cytoskeleton | - | - | - | - | - | - | - | - | - | - | - | - |
W | Extracellular structures | - | - | - | - | - | - | - | - | - | - | - | - |
U | Intracellular trafficking and secretion | 24 | 0.92 | 25 | 0.90 | 25 | 0.95 | 27 | 0.96 | 24 | 0.84 | 24 | 0.82 |
O | Posttranslational modification, protein turnover and chaperons | 50 | 1.91 | 49 | 1.77 | 48 | 1.83 | 48 | 1.71 | 49 | 1.72 | 48 | 1.64 |
C | Energy production and conversion | 106 | 4.05 | 106 | 3.83 | 105 | 4.00 | 106 | 3.78 | 107 | 3.75 | 106 | 3.61 |
G | Carbohydrate transport and metabolism | 269 | 10.29 | 282 | 10.18 | 264 | 10.06 | 262 | 9.34 | 296 | 10.38 | 277 | 9.44 |
E | Amino acid transport and metabolism | 173 | 6.62 | 172 | 6.21 | 169 | 6.44 | 176 | 6.28 | 171 | 5.99 | 173 | 5.89 |
F | Nucleotide transport and metabolism | 93 | 3.56 | 90 | 3.25 | 87 | 3.31 | 93 | 3.32 | 92 | 3.22 | 90 | 3.07 |
H | Coenzyme transport and metabolism | 69 | 2.64 | 68 | 2.46 | 68 | 2.59 | 72 | 2.57 | 66 | 2.31 | 72 | 2.45 |
I | Lipid transport and metabolism | 56 | 2.14 | 56 | 2.02 | 57 | 2.17 | 59 | 2.10 | 56 | 1.96 | 58 | 1.98 |
P | Inorganic ion transport and metabolism | 118 | 4.51 | 115 | 4.15 | 110 | 4.19 | 119 | 4.24 | 112 | 3.93 | 115 | 3.92 |
Q | Secondary metabolism biosynthesis, tansport and catabolism | 28 | 1.07 | 28 | 1.01 | 28 | 1.07 | 31 | 1.11 | 27 | 0.95 | 30 | 1.02 |
R | General function prediction only | 249 | 9.52 | 251 | 9.06 | 245 | 9.33 | 255 | 9.09 | 253 | 8.87 | 253 | 8.62 |
S | Function unknown | 218 | 8.34 | 224 | 8.09 | 222 | 8.46 | 220 | 7.85 | 235 | 8.24 | 238 | 8.11 |
- | Not in COGs | 604 | 23.10 | 745 | 26.91 | 645 | 24.57 | 779 | 27.78 | 804 | 28.18 | 851 | 28.99 |