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Table 4 Number of genes associated with the 25 general COG functional categories

From: Genome sequences of copper resistant and sensitive Enterococcus faecalis strains isolated from copper-fed pigs in Denmark

Code Attribute Strain
S1 S12 S17 S18 S19 S32
Value % Value % Value % Value % Value % Value %
J Translation, ribosomal structure and biogenesis 155 5.93 152 5.49 152 5.79 153 5.46 152 5.33 153 5.21
A RNA processing and modification - - - - - - - - - - - -
K Transcription 172 6.58 178 6.43 174 6.63 173 6.17 183 6.41 184 6.27
L Replication, recombination and repair 114 4.36 125 4.51 112 4.27 127 4.53 127 4.45 132 4.50
B Chromatin structure and dynamics - - - - - - - - - - - -
D Cell cycle control, mitosis and meiosis 22 0.84 25 0.90 22 0.84 21 0.75 23 0.81 24 0.82
Y Nuclear structure - - - - - - - - - - - -
V Defense mechanisms 56 2.14 45 1.63 51 1.94 46 1.64 46 1.61 54 1.84
T Signal transduction mechanisms 90 3.44 89 3.21 85 3.24 94 3.35 87 3.05 95 3.24
M Cell wall/membrane biogenesis 105 4.02 100 3.61 107 4.08 105 3.74 98 3.43 123 4.19
N Cell motility 10 0.38 10 0.36 11 0.42 9 0.32 12 0.42 12 0.41
Z Cytoskeleton - - - - - - - - - - - -
W Extracellular structures - - - - - - - - - - - -
U Intracellular trafficking and secretion 24 0.92 25 0.90 25 0.95 27 0.96 24 0.84 24 0.82
O Posttranslational modification, protein turnover and chaperons 50 1.91 49 1.77 48 1.83 48 1.71 49 1.72 48 1.64
C Energy production and conversion 106 4.05 106 3.83 105 4.00 106 3.78 107 3.75 106 3.61
G Carbohydrate transport and metabolism 269 10.29 282 10.18 264 10.06 262 9.34 296 10.38 277 9.44
E Amino acid transport and metabolism 173 6.62 172 6.21 169 6.44 176 6.28 171 5.99 173 5.89
F Nucleotide transport and metabolism 93 3.56 90 3.25 87 3.31 93 3.32 92 3.22 90 3.07
H Coenzyme transport and metabolism 69 2.64 68 2.46 68 2.59 72 2.57 66 2.31 72 2.45
I Lipid transport and metabolism 56 2.14 56 2.02 57 2.17 59 2.10 56 1.96 58 1.98
P Inorganic ion transport and metabolism 118 4.51 115 4.15 110 4.19 119 4.24 112 3.93 115 3.92
Q Secondary metabolism biosynthesis, tansport and catabolism 28 1.07 28 1.01 28 1.07 31 1.11 27 0.95 30 1.02
R General function prediction only 249 9.52 251 9.06 245 9.33 255 9.09 253 8.87 253 8.62
S Function unknown 218 8.34 224 8.09 222 8.46 220 7.85 235 8.24 238 8.11
- Not in COGs 604 23.10 745 26.91 645 24.57 779 27.78 804 28.18 851 28.99
  1. The total is based on the total number of protein coding genes in the annotated genome