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Table 6 M2B3 Reporting Standard about organisms in a sample

From: Marine microbial biodiversity, bioinformatics and biotechnology (M2B3) data reporting and service standards

 

Descriptor name

Description of usage

Control vocabulary/format/unit

Example

 

ORGANISM_Taxon_ID

An identifier for the nomenclatural (not taxonomic) details of a scientific name.

Terms list: WoRMS

urn:lsid:marinespecies.org:taxname: 345516

Format: LSID

ORGANISM_Taxon_Scientific_Name

The full name of the lowest level taxon.

Terms list: WoRMS

Prochlorococcus marinus

Format: Taxon name

ORGANISM_

Sex

The sex of a specimen or collected/observed individual(s).

Terms list: M = Male; F = Female; H = Hermaphrodite; I = Indeterminate (examined but could not be determined; U = Unkown (not examined); T = Transitional (between sexes; useful for sequential hermaphrodites); B = Both Male and Female

M

ORGANISM_Life_Stage

Indicates the life stage present.

Free text

resting spores

ORGANISM_Size

Refers to size measurements that are made concurrently to the enumeration and identification of organisms.

Define the measurement according to Table 7.

ORGANISM_Biovolume

Refers to volume measurements/calculations that are made concurrently to the enumeration and identification of organisms.

Define the measurement according to Table 7.

ORGANISM_Biomass

Refers to biomass measurements/calculations that are made concurrently to the enumeration and identification of organisms.

Define the measurement according to Table 7.

  1. Mandatory information is in bold and other fields are recommended WoRMS is the World Register of Marine Species (http://www.marinespecies.org/aphia.php?p=search).