Table 5 Number of genes associated with the 25 general COG functional categories
Code | Value | % a | Description |
|---|---|---|---|
J | 157 | 4.86 | Translation |
A | 1 | 0.03 | RNA processing and modification |
K | 148 | 4.58 | Transcription |
L | 123 | 3.81 | Replication, recombination, and repair |
B | 0 | 0.00 | Chromatin structure and dynamics |
D | 23 | 0.71 | Cell cycle control, mitosis, and meiosis |
Y | 0 | 0.00 | Nuclear structure |
V | 40 | 1.24 | Defense mechanisms |
T | 121 | 3.75 | Signal transduction mechanisms |
M | 220 | 6.81 | Cell wall/membrane biogenesis |
N | 18 | 0.56 | Cell motility |
Z | 0 | 0.00 | Cytoskeleton |
W | 0 | 0.00 | Extracellular structures |
U | 45 | 1.39 | Intracellular trafficking and secretion |
O | 81 | 2.51 | Posttranslational modification, protein turnover, and chaperones |
C | 122 | 3.78 | Energy production and conversion |
G | 207 | 6.41 | Carbohydrate transport and metabolism |
E | 170 | 5.26 | Amino acid transport and metabolism |
F | 62 | 1.92 | Nucleotide transport and metabolism |
H | 127 | 3.93 | Coenzyme transport and metabolism |
I | 93 | 2.88 | Lipid transport and metabolism |
P | 170 | 5.26 | Inorganic ion transport and metabolism |
Q | 42 | 1.30 | Secondary metabolites biosynthesis, transport, and catabolism |
R | 318 | 9.85 | General function prediction only |
S | 196 | 6.07 | Function unknown |
- | 949 | 29.38 | Not in COGs |