Table 4 Number of genes associated with the 25 general COG functional categories
From: Complete genome sequence of the fish pathogen Flavobacterium psychrophilum ATCC 49418T
Code | Value | % of total | Description |
|---|---|---|---|
J | 140.0 | 9.66 | Translation |
A | 0.0 | 0.00 | RNA processing and modification |
K | 72.0 | 4.97 | Transcription |
L | 96.0 | 6.63 | Replication, recombination and repair |
B | 0.0 | 0.00 | Chromatin structure and dynamics |
D | 18.0 | 1.24 | Cell cycle control, mitosis and meiosis |
Y | 0.0 | 0.00 | Nuclear structure |
V | 41.0 | 2.83 | Defense mechanisms |
T | 32.0 | 2.21 | Signal transduction mechanisms |
M | 145.0 | 10.01 | Cell wall/membrane biogenesis |
N | 4.0 | 0.28 | Cell motility |
Z | 1.0 | 0.07 | Cytoskeleton |
W | 0.0 | 0.00 | Extracellular structures |
U | 31.0 | 2.14 | Intracellular trafficking and secretion |
O | 61.0 | 4.21 | Posttranslational modification, protein turnover, chaperones |
C | 75.0 | 5.16 | Energy production and conversion |
G | 51.0 | 3.52 | Carbohydrate transport and metabolism |
E | 120.0 | 8.28 | Amino acid transport and metabolism |
F | 54.0 | 3.73 | Nucleotide transport and metabolism |
H | 96.0 | 6.63 | Coenzyme transport and metabolism |
I | 63.0 | 4.35 | Lipid transport and metabolism |
P | 70.0 | 4.83 | Inorganic ion transport and metabolism |
Q | 26.0 | 1.79 | Secondary metabolites biosynthesis, transport and catabolism |
R | 164.0 | 11.32 | General function prediction only |
S | 89.0 | 6.14 | Function unknown |
- | 1050 | 43.80 | Not in COGs |