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  1. Streptococcus agalactiae, also referred to as Group B Streptococcus, is a frequent resident of the rectovaginal tract in humans, and a major cause of neonatal infection. The pathogen can ...

    Authors: Edgar Lacerda de Aguiar, Diego César Batista Mariano, Marcus Vinícius Canário Viana, Leandro de Jesus Benevides, Flávia de Souza Rocha, Letícia de Castro Oliveira, Felipe Luiz Pereira, Fernanda Alves Dorella, Carlos Augusto Gomes Leal, Alex Fiorini de Carvalho, Gabriela Silva Santos, Ana Luiza Mattos-Guaraldi, Prescilla Emy Nagao, Siomar de Castro Soares, Syed Shah Hassan, Anne Cybele Pinto…
    Citation: Standards in Genomic Sciences 2016 11:39
  2. Thioalkalimicrobium cyclicum Sorokin et al. 2002 is a member of the family Piscirickettsiaceae in the order Thiotrichales. The γ-proteobacterium belongs to the colourless sulfur-oxidizing...

    Authors: Ulrike Kappler, Karen Davenport, Scott Beatson, Alla Lapidus, Chongle Pan, Cliff Han, Maria del Carmen Montero-Calasanz, Miriam Land, Loren Hauser, Manfred Rohde, Markus Göker, Natalia Ivanova, Tanja Woyke, Hans-Peter Klenk and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2016 11:38
  3. Strains of the genus Gramella (family Flavobacteriacae, phylum Bacteroidetes) were isolated from marine habitats such as tidal flat sediments, coastal surface seawater and sea urchins. Flavobacteriaceae have been...

    Authors: Irina Panschin, Sixing Huang, Jan P. Meier-Kolthoff, Brian J. Tindall, Manfred Rohde, Susanne Verbarg, Alla Lapidus, James Han, Stephan Trong, Matthew Haynes, T. B. K. Reddy, Marcel Huntemann, Amrita Pati, Natalia N. Ivanova, Konstantinos Mavromatis, Victor Markowitz…
    Citation: Standards in Genomic Sciences 2016 11:37
  4. Pecan scab, caused by the plant pathogenic fungus Fusicladium effusum, is the most destructive disease of pecan, an important specialty crop cultivated in several regions of the world. Only a few members of the f...

    Authors: Clive H. Bock, Chunxian Chen, Fahong Yu, Katherine L. Stevenson and Bruce W. Wood
    Citation: Standards in Genomic Sciences 2016 11:36
  5. Strain M27-SA2 was isolated from the deep-sea salt-saturated anoxic lake Medee, which represents one of the most hostile extreme environments on our planet. On the basis of physiological studies and phylogenet...

    Authors: Enzo Messina, Dimitry Y. Sorokin, Ilya V. Kublanov, Stepan Toshchakov, Anna Lopatina, Erika Arcadi, Francesco Smedile, Gina La Spada, Violetta La Cono and Michail M. Yakimov
    Citation: Standards in Genomic Sciences 2016 11:35
  6. Staphylococcus aureus is a versatile Gram-positive coccus frequently found colonizing the skin and nasal membranes of humans. The acquisition of the staphylococcal cassette chromosome mec

    Authors: Ana M. N. Botelho, Maiana O. C. Costa, Cristiana O. Beltrame, Fabienne A. Ferreira, Marina F. Côrtes, Paula T. Bandeira, Nicholas C. B. Lima, Rangel C. Souza, Luiz G. P. Almeida, Ana T. R. Vasconcelos, Marisa F. Nicolás and Agnes M. S. Figueiredo
    Citation: Standards in Genomic Sciences 2016 11:34
  7. Strain G3T (CSUR P207 = DSM 26203) was isolated from the fecal sample of a wild gorilla (Gorilla gorilla subsp gorilla) from Cameroon. It is a Gram-positive, facultative anaerobic short rod. This strain exhibits ...

    Authors: Linda Hadjadj, Jaishriram Rathored, Mamadou Bhoye Keita, Caroline Michelle, Anthony Levasseur, Didier Raoult, Pierre-Edouard Fournier, Jean-Marc Rolain and Fadi Bittar
    Citation: Standards in Genomic Sciences 2016 11:32
  8. Strain FF7T was isolated from the peritoneal fluid of a 44-year-old woman who suffered from pelvic peritonitis. This strain exhibited a 16S rRNA sequence similarity of 94.8 % 16S rRNA sequence identity with Haemo...

    Authors: Cheikh Ibrahima Lo, Senthil Alias Sankar, Bécaye Fall, Bissoume Sambe-Ba, Silman Diawara, Mamadou Wague Gueye, Oleg Mediannikov, Caroline Blanc-Tailleur, Boubacar Wade, Didier Raoult, Pierre-Edouard Fournier and Florence Fenollar
    Citation: Standards in Genomic Sciences 2016 11:31
  9. The genus Francisella is composed of Gram-negative, pleomorphic, strictly aerobic and non-motile bacteria, which are capable of infecting a variety of terrestrial and aquatic animals, among which Francisella noat...

    Authors: Lucas Amorim Gonçalves, Siomar de Castro Soares, Felipe Luiz Pereira, Fernanda Alves Dorella, Alex Fiorini de Carvalho, Gabriel Magno de Freitas Almeida, Carlos Augusto Gomes Leal, Vasco Azevedo and Henrique César Pereira Figueiredo
    Citation: Standards in Genomic Sciences 2016 11:30
  10. Corynebacterium pseudotuberculosis strain VD57 (Cp_VD57), a highly virulent, nonmotile, non-sporulating, and a mesophilic bacterium, was isolated from a goat’s granulomatous lesion in the...

    Authors: Sintia Almeida, Sandeep Tiwari, Diego Mariano, Flávia Souza, Syed Babar Jamal, Nilson Coimbra, Roberto Tadeu Raittz, Fernanda Alves Dorella, Alex Fiorine de Carvalho, Felipe Luiz Pereira, Siomar de Castro Soares, Carlos Augusto Gomes Leal, Debmalya Barh, Preetam Ghosh, Henrique Figueiredo, Lília Ferreira Moura-Costa…
    Citation: Standards in Genomic Sciences 2016 11:29
  11. Candidatus Achromatium palustre” was recently described as the first marine representative of the Achromatium spp. in the Thiotrichaceae - a sister lineage to the Chromatiaceae in the Gammaproteobacteria. Achrom...

    Authors: Verena Salman, Tom Berben, Robert M. Bowers, Tanja Woyke, Andreas Teske and Esther R. Angert
    Citation: Standards in Genomic Sciences 2016 11:28
  12. Authors: Marcel Huntemann, Natalia N. Ivanova, Konstantinos Mavromatis, H. James Tripp, David Paez-Espino, Krishnaveni Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor M. Markowitz and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2016 11:27

    The original article was published in Standards in Genomic Sciences 2015 10:86

  13. Acetogens are a specialized group of anaerobic bacteria able to produce acetate from CO2 and H2 via the Wood–Ljungdahl pathway. In some gut environments acetogens can compete with methanogens for H2, and as a res...

    Authors: William J. Kelly, Gemma Henderson, Diana M. Pacheco, Dong Li, Kerri Reilly, Graham E. Naylor, Peter H. Janssen, Graeme T. Attwood, Eric Altermann and Sinead C. Leahy
    Citation: Standards in Genomic Sciences 2016 11:26
  14. Shimia strain SK013 is an aerobic, Gram-negative, rod shaped alphaproteobacterium affiliated with the Roseobacter group within the family Rhodobacteraceae. The strain was isolated from su...

    Authors: Saranya Kanukollu, Sonja Voget, Marion Pohlner, Verona Vandieken, Jörn Petersen, Nikos C. Kyrpides, Tanja Woyke, Nicole Shapiro, Markus Göker, Hans-Peter Klenk, Heribert Cypionka and Bert Engelen
    Citation: Standards in Genomic Sciences 2016 11:25
  15. Rhodopseudomonas palustris strain 42OL was isolated in 1973 from a sugar refinery waste treatment pond. The strain has been prevalently used for hydrogen production processes using a wide...

    Authors: Alessandra Adessi, Giulia Spini, Luana Presta, Alessio Mengoni, Carlo Viti, Luciana Giovannetti, Renato Fani and Roberto De Philippis
    Citation: Standards in Genomic Sciences 2016 11:24
  16. The genus Pantoea incorporates many economically and clinically important species. The plant-associated species, Pantoea agglomerans and Pantoea vagans, are closely related and are often isolated from similar env...

    Authors: Marike Palmer, Pieter de Maayer, Michael Poulsen, Emma T. Steenkamp, Elritha van Zyl, Teresa A. Coutinho and Stephanus N. Venter
    Citation: Standards in Genomic Sciences 2016 11:23
  17. Two closely related ophiostomatoid fungi, Knoxdaviesia capensis and K. proteae, inhabit the fruiting structures of certain Protea species indigenous to southern Africa. Although K. capensis occurs in several Prot...

    Authors: Janneke Aylward, Emma T. Steenkamp, Léanne L. Dreyer, Francois Roets, Brenda D. Wingfield and Michael J. Wingfield
    Citation: Standards in Genomic Sciences 2016 11:22
  18. Nereida ignava strain 2SM4T (= CECT 5292T = DSM 16309T = CIP 108404T = CCUG 49433T) is a marine bacterium belonging to the Roseobacter group of the family Rhodobacteraceae within the clas...

    Authors: David R. Arahal, María J. Pujalte and Lidia Rodrigo-Torres
    Citation: Standards in Genomic Sciences 2016 11:21
  19. Thermus amyloliquefaciens type strain YIM 77409T is a thermophilic, Gram-negative, non-motile and rod-shaped bacterium isolated from Niujie Hot Spring in Eryuan County, Yunnan Province, s...

    Authors: En-Min Zhou, Senthil K. Murugapiran, Chrisabelle C. Mefferd, Lan Liu, Wen-Dong Xian, Yi-Rui Yin, Hong Ming, Tian-Tian Yu, Marcel Huntemann, Alicia Clum, Manoj Pillay, Krishnaveni Palaniappan, Neha Varghese, Natalia Mikhailova, Dimitrios Stamatis, T. B. K. Reddy…
    Citation: Standards in Genomic Sciences 2016 11:20
  20. Leptospirillum ferriphilum Sp-Cl is a Gram negative, thermotolerant, curved, rod-shaped bacterium, isolated from an industrial bioleaching operation in northern Chile, where chalcocite is...

    Authors: Francisco Issotta, Pedro A. Galleguillos, Ana Moya-Beltrán, Carol S. Davis-Belmar, George Rautenbach, Paulo C. Covarrubias, Mauricio Acosta, Francisco J. Ossandon, Yasna Contador, David S. Holmes, Sabrina Marín-Eliantonio, Raquel Quatrini and Cecilia Demergasso
    Citation: Standards in Genomic Sciences 2016 11:19
  21. Sphingomonas paucimobilis strain LCT-SP1 is a glucose-nonfermenting Gram-negative, chemoheterotrophic, strictly aerobic bacterium. The major feature of strain LCT-SP1, isolated from the C...

    Authors: Lei Pan, Hong Zhou, Jia Li, Bing Huang, Jun Guo, Xue-Lin Zhang, Long-Cheng Gao, Chou Xu and Chang-Ting Liu
    Citation: Standards in Genomic Sciences 2016 11:18
  22. The DOE-JGI Metagenome Annotation Pipeline (MAP v.4) performs structural and functional annotation for metagenomic sequences that are submitted to the Integrated Microbial Genomes with Microbiomes (IMG/M) syst...

    Authors: Marcel Huntemann, Natalia N. Ivanova, Konstantinos Mavromatis, H. James Tripp, David Paez-Espino, Kristin Tennessen, Krishnaveni Palaniappan, Ernest Szeto, Manoj Pillay, I-Min A. Chen, Amrita Pati, Torben Nielsen, Victor M. Markowitz and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2016 11:17
  23. Members of the genus Geobacillus have been isolated from a wide variety of habitats worldwide and are the subject for targeted enzyme utilization in various industrial applications. Here we report the isolation a...

    Authors: Juliane Wissuwa, Runar Stokke, Anita-Elin Fedøy, Kjersti Lian, Arne Oskar Smalås and Ida Helene Steen
    Citation: Standards in Genomic Sciences 2016 11:16
  24. Many genomes are incorrectly identified at GenBank. We developed a plan to find and correct misidentified genomes using genomic comparison statistics together with a scaffold of reliably identified genomes fro...

    Authors: Scott Federhen, Ramon Rossello-Mora, Hans-Peter Klenk, Brian J. Tindall, Konstantinos T. Konstantinidis, William B. Whitman, Daniel Brown, David Labeda, David Ussery, George M. Garrity, Rita R. Colwell, Nur Hasan, Joerg Graf, Aidan Parte, Pablo Yarza, Brittany Goldberg…
    Citation: Standards in Genomic Sciences 2016 11:15
  25. Shinella sp. strain DD12, a novel phosphite assimilating bacterium, has been isolated from homogenized guts of 4 days starved zooplankton Daphnia magna. Here we report the draft genome of...

    Authors: Anja Poehlein, Heike Freese, Rolf Daniel and Diliana D. Simeonova
    Citation: Standards in Genomic Sciences 2016 11:14
  26. Avian pathogenic Escherichia coli is an important etiological agent of avian colibacillosis, which manifests as respiratory, hematogenous, meningitic, and enteric infections in poultry. It is also a potential zoo...

    Authors: Xiangru Wang, Liuya Wei, Bin Wang, Ruixuan Zhang, Canying Liu, Dingren Bi, Huanchun Chen and Chen Tan
    Citation: Standards in Genomic Sciences 2016 11:13
  27. Xanthomonas arboricola is a species in genus Xanthomonas which is mainly comprised of plant pathogens. Among the members of this taxon, X. arboricola pv. pruni, the causal agent of bacter...

    Authors: Jerson Garita-Cambronero, Ana Palacio-Bielsa, María M. López and Jaime Cubero
    Citation: Standards in Genomic Sciences 2016 11:12
  28. The cyanobacterial genus Microcystis is well known as the main group that forms harmful blooms in water. A strain of Microcystis, M. panniformis FACHB1757, was isolated from Meiliang Bay of Lake Taihu in August 2...

    Authors: Jun-Yi Zhang, Rui Guan, Hu-Jun Zhang, Hua Li, Peng Xiao, Gong-Liang Yu, Lei Du, De-Min Cao, Bing-Chuan Zhu, Ren-Hui Li and Zu-Hong Lu
    Citation: Standards in Genomic Sciences 2016 11:11
  29. Paenibacillus sp. strain A2 is a Gram-negative rod-shaped bacterium isolated from a mixture of formation water and petroleum in Daqing oilfield, China. This facultative aerobic bacterium ...

    Authors: Beiwen Zheng, Fan Zhang, Hao Dong, Lujun Chai, Fuchang Shu, Shaojin Yi, Zhengliang Wang, Qingfeng Cui, Hanping Dong, Zhongzhi Zhang, Dujie Hou, Jinshui Yang and Yuehui She
    Citation: Standards in Genomic Sciences 2016 11:9
  30. The Gram-positive actinomycete Williamsia sp. ARP1 was originally isolated from the Arabidopsis thaliana phyllosphere. Here we describe the general physiological features of this microorganism together with the d...

    Authors: Hannes Horn, Alexander Keller, Ulrich Hildebrandt, Peter Kämpfer, Markus Riederer and Ute Hentschel
    Citation: Standards in Genomic Sciences 2016 11:8
  31. Ralstonia solanacearum is the causative agent of bacterial wilt of potato. Ralstonia solanacearum strain UY031 belongs to the American phylotype IIB, sequevar 1, also classified as race 3...

    Authors: Rodrigo Guarischi-Sousa, Marina Puigvert, Núria S. Coll, María Inés Siri, María Julia Pianzzola, Marc Valls and João C. Setubal
    Citation: Standards in Genomic Sciences 2016 11:7
  32. Propionibacterium freudenreichii belongs to the class Actinobacteria (Gram positive with a high GC content). This “Generally Recognized As Safe” (GRAS) species is traditionally used as (i...

    Authors: Hélène Falentin, Stéphanie-Marie Deutsch, Valentin Loux, Amal Hammani, Julien Buratti, Sandrine Parayre, Victoria Chuat, Valérie Barbe, Jean-Marc Aury, Gwenaël Jan and Yves Le Loir
    Citation: Standards in Genomic Sciences 2016 11:6
  33. The Pseudomonas fluorescens strain UM270 was isolated form the rhizosphere of wild Medicago spp. A previous work has shown that this pseudomonad isolate was able to produce diverse diffusible and volatile compoun...

    Authors: Julie E. Hernández-Salmerón, Rocio Hernández-León, Ma. Del Carmen Orozco-Mosqueda, Eduardo Valencia-Cantero, Gabriel Moreno-Hagelsieb and Gustavo Santoyo
    Citation: Standards in Genomic Sciences 2016 11:5
  34. Phaseolibacter flectens strain ATCC 12775T (Halpern et al., Int J Syst Evol Microbiol 63:268–273, 2013) is a Gram-negative, rod shaped, motile, aerobic, chemoorganotroph bacterium. Ph. fl...

    Authors: Yana Aizenberg-Gershtein, Ido Izhaki, Alla Lapidus, Alex Copeland, TBK Reddy, Marcel Huntemann, Manoj Pillay, Victor Markowitz, Markus Göker, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Malka Halpern
    Citation: Standards in Genomic Sciences 2016 11:4
  35. This report presents the permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, an obligate anaerobic hyperthermophilic crenarchaeon that was isolated from acidic hot springs in Hveravel...

    Authors: Dwi Susanti, Eric F. Johnson, Alla Lapidus, James Han, T. B. K. Reddy, Manoj Pilay, Natalia N. Ivanova, Victor M. Markowitz, Tanja Woyke, Nikos C. Kyrpides and Biswarup Mukhopadhyay
    Citation: Standards in Genomic Sciences 2016 11:3
  36. Methanospirillum hungatei strain JF1 (DSM 864) is a methane-producing archaeon and is the type species of the genus Methanospirillum, which belongs to the family Methanospirillaceae withi...

    Authors: Robert P. Gunsalus, Lauren E. Cook, Bryan Crable, Lars Rohlin, Erin McDonald, Housna Mouttaki, Jessica R. Sieber, Nicole Poweleit, Hong Zhou, Alla L. Lapidus, Hajnalka Erzsebet Daligault, Miriam Land, Paul Gilna, Natalia Ivanova, Nikos Kyrpides, David E. Culley…
    Citation: Standards in Genomic Sciences 2016 11:2
  37. Myxobacteria, phylogenetically located in the delta division of the Proteobacteria, are well known for characterized social behaviors and large genomes of more than 9 Mb in size. Myxococcus fulvus is a typical sp...

    Authors: Xiao-jing Chen, Kui Han, Jing Feng, Li Zhuo, Ya-jie Li and Yue-zhong Li
    Citation: Standards in Genomic Sciences 2016 11:1
  38. Bacillus subtilis LM 4–2, a Gram-positive bacterium was isolated from a molybdenum mine in Luoyang city. Due to its strong resistance to molybdate and potential utilization in bioremediat...

    Authors: Xiao-Yan You, Hui Wang, Guang-Yue Ren, Jing-Jing Li, Xu Duan, Hua-Jun Zheng and Zheng-Qiang Jiang
    Citation: Standards in Genomic Sciences 2015 10:127
  39. Ensifer medicae WSM244 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Medicago species. WSM244 was isolate...

    Authors: Julie Ardley, Rui Tian, Graham O’Hara, Rekha Seshadri, T. B. K. Reddy, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, John Howieson and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:126
  40. Escherichia coli lab strains K-12 GM4792 Lac+ and GM4792 Lac- carry opposite lactose markers, which are useful for distinguishing evolved lines as they produce different colored colonies....

    Authors: Yan-Cong Zhang, Yan Zhang, Bi-Ru Zhu, Bo-Wen Zhang, Chuan Ni, Da-Yong Zhang, Ying Huang, Erli Pang and Kui Lin
    Citation: Standards in Genomic Sciences 2015 10:125
  41. Halopiger salifodinae strain KCY07-B2T, isolated from a salt mine in Kuche county, Xinjiang province, China, belongs to the family Halobacteriaceae. It is a strictly aerobic, pleomorphic,...

    Authors: Wei-Yan Zhang, Jing Hu, Jie Pan, Cong Sun, Min Wu and Xue-Wei Xu
    Citation: Standards in Genomic Sciences 2015 10:124
  42. Lysobacter dokdonensis DS-58, belonging to the family Xanthomonadaceae, was isolated from a soil sample in Dokdo, Korea in 2011. Strain DS-58 is the type strain of L. dokdonensis. In this...

    Authors: Min-Jung Kwak, Soon-Kyeong Kwon, Jung-Hoon Yoon and Jihyun F. Kim
    Citation: Standards in Genomic Sciences 2015 10:123
  43. A strain of a hyperthermophilic filamentous archaeon was isolated from a sample of Kamchatka hot spring sediment. Isolate 1807-2 grew optimally at 85 °C, pH 6.0-6.5, the parameters being close to those at the ...

    Authors: Stepan V. Toshchakov, Aleksei A. Korzhenkov, Nazar I. Samarov, Ilia O. Mazunin, Oleg I. Mozhey, Ilya S. Shmyr, Ksenia S. Derbikova, Evgeny A. Taranov, Irina N. Dominova, Elizaveta A. Bonch-Osmolovskaya, Maxim V. Patrushev, Olga A. Podosokorskaya and Ilya V. Kublanov
    Citation: Standards in Genomic Sciences 2015 10:122
  44. Rhizobium leguminosarum bv. trifolii strain CC275e is a highly effective, N2-fixing microsymbiont of white clover (Trifolium repens L.). The bacterium has been widely used in both Austral...

    Authors: Clément Delestre, Aurélie Laugraud, Hayley Ridgway, Clive Ronson, Maureen O’Callaghan, Brent Barrett, Ross Ballard, Andrew Griffiths, Sandra Young, Celine Blond, Emily Gerard and Steve Wakelin
    Citation: Standards in Genomic Sciences 2015 10:121
  45. Gemmata massiliana is a new Planctomycetes bacterium isolated from a hospital water network in France, using a new culture medium. It is an aerobic microorganism with optimal growth at pH...

    Authors: Rita Aghnatios, Caroline Cayrou, Marc Garibal, Catherine Robert, Said Azza, Didier Raoult and Michel Drancourt
    Citation: Standards in Genomic Sciences 2015 10:120
  46. Next-generation sequencing (NGS) is not routinely used in applied settings due to lack of confidence in results. This workshop convened experts to identify measurement challenges impeding NGS implementation an...

    Authors: Nathan D. Olson, Scott A. Jackson and Nancy J. Lin
    Citation: Standards in Genomic Sciences 2015 10:119
  47. Strain GSS01T (=KCTC 4545=MCCC 1 K00269) is the type strain of the species Geobacter soli. G. soli strain GSS01T is of interest due to its ability to reduce insoluble Fe(III) oxides with a wide range of electron ...

    Authors: Guiqin Yang, Shanshan Chen, Shungui Zhou and Yongfeng Liu
    Citation: Standards in Genomic Sciences 2015 10:118
  48. In the context of recent international initiatives to bolster genomics research for Africa, and more specifically to develop bioinformatics expertise and networks across the continent, a workshop on computatio...

    Authors: Shakuntala Baichoo, Gerrit Botha, Yasmina Jaufeerally-Fakim, Zahra Mungloo-Dilmohamud, Daniel Lundin, Nicola Mulder, Vasilis J. Promponas and Christos A. Ouzounis
    Citation: Standards in Genomic Sciences 2015 10:115