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  1. The PathoLogic component of the Pathway Tools software performs prediction of metabolic pathways in sequenced and annotated genomes. This article provides a detailed presentation of the PathoLogic algorithm. T...

    Authors: Peter D. Karpe, Mario Latendresse and Ron Caspi

    Citation: Standards in Genomic Sciences 2011 5:5030424

    Content type: OriginalPaper

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  2. Desulfurobacterium thermolithotrophum L’Haridon et al. 1998 is the type species of the genus Desulfurobacterium which belongs to the family Desulfurobacteriaceae. The species is of interest because it represents ...

    Authors: Markus Göker, Hajnalka Daligault, Romano Mwirichia, Alla Lapidus, Susan Lucas, Shweta Deshpande, Ioanna Pagani, Roxanne Tapia, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2011 5:5030407

    Content type: OriginalPaper

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  3. Herpetosiphon aurantiacus Holt and Lewin 1968 is the type species of the genus Herpetosiphon, which in turn is the type genus of the family Herpetosiphonaceae, type family of the order Herpetosiphonales in the ph...

    Authors: Hajnalka Kiss, Markus Nett, Nicole Domin, Karin Martin, Julia A. Maresca, Alex Copeland, Alla Lapidus, Susan Lucas, Kerrie W. Berry, Tijana Glavina Del Rio, Eileen Dalin, Hope Tice, Sam Pitluck, Paul Richardson, David Bruce, Lynne Goodwin…

    Citation: Standards in Genomic Sciences 2011 5:5030356

    Content type: OriginalPaper

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  4. Thioalkalivibrio sp. K90mix is an obligately chemolithoautotrophic, natronophilic sulfur-oxidizing bacterium (SOxB) belonging to the family Ectothiorhodospiraceae within the Gammaproteobacteria. The strain was is...

    Authors: Gerard Muyzer, Dimitry Y. Sorokin, Konstantinos Mavromatis, Alla Lapidus, Brian Foster, Hui Sun, Natalia Ivanova, Amrita Pati, Patrik D’haeseleer, Tanja Woyke and Nikos C. Kyrpides

    Citation: Standards in Genomic Sciences 2011 5:5030341

    Content type: OriginalPaper

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  5. Bacillus coagulans is a ubiquitous soil bacterium that grows at 50–55 °C and pH 5.0 and ferments various sugars that constitute plant biomass to L (+)-lactic acid. The ability of this sporogenic lactic acid bacte...

    Authors: Mun Su Rhee, Brélan E. Moritz, Gary Xie, T. Glavina del Rio, E. Dalin, H. Tice, D. Bruce, L. Goodwin, O. Chertkov, T. Brettin, C. Han, C. Detter, S. Pitluck, Miriam L. Land, Milind Patel, Mark Ou…

    Citation: Standards in Genomic Sciences 2011 5:5030331

    Content type: OriginalPaper

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  6. Allochromatium vinosum formerly Chromatium vinosum is a mesophilic purple sulfur bacterium belonging to the family Chromatiaceae in the bacterial class Gammaproteobacteria. The genus Allochromatium contains curre...

    Authors: Thomas Weissgerber, Renate Zigann, David Bruce, Yun-juan Chang, John C. Detter, Cliff Han, Loren Hauser, Cynthia D. Jeffries, Miriam Land, A. Christine Munk, Roxanne Tapia and Christiane Dahl

    Citation: Standards in Genomic Sciences 2011 5:5030311

    Content type: OriginalPaper

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  7. The family Hyphomonadaceae within the Alphaproteobacteria is largely comprised of bacteria isolated from marine environments with striking morphologies and an unusual mode of cell growth. Here, we report the comp...

    Authors: Olga Chertkov, Pamela J. B. Brown, David T. Kysela, Miguel A. de Pedro, Susan Lucas, Alex Copeland, Alla Lapidus, Tijana Glavina Del Rio, Hope Tice, David Bruce, Lynne Goodwin, Sam Pitluck, John C. Detter, Cliff Han, Frank Larimer, Yun-juan Chang…

    Citation: Standards in Genomic Sciences 2011 5:5030287

    Content type: OriginalPaper

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  8. Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known...

    Authors: Jana Grote, Cansu Bayindirli, Kristin Bergauer, Paula Carpintero de Moraes, Huan Chen, Lindsay D’Ambrosio, Bethanie Edwards, Beatriz Fernández-Gómez, Mariam Hamisi, Ramiro Logares, Dan Nguyen, Yoshimi M. Rii, Emily Saeck, Charles Schutte, Brittany Widner, Matthew J. Church…

    Citation: Standards in Genomic Sciences 2011 5:5030269

    Content type: OriginalPaper

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  9. ClaMS — “Classifier for Metagenomic Sequences” — is a Java application for binning assembled contigs in metagenomes using user-specified training sets and initial parameters. Since ClaMS trains on sequence com...

    Authors: Amrita Pati, Lenwood S. Heath, Nikos C. Kyrpides and Natalia Ivanova

    Citation: Standards in Genomic Sciences 2011 5:5020248

    Content type: OriginalPaper

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  10. This report details the outcome of the 1st International Earth Microbiome Project Conference. The 2-day conference was held at the Kingkey Palace Hotel, Shenzhen, China, on the 14th–15th June 2011, and was hos...

    Authors: Jack A. Gilbert, Mark Bailey, Dawn Field, Noah Fierer, Jed A. Fuhrman, Bin Hu, Janet Jansson, Rob Knight, George A. Kowalchuk, Nikos C. Kyrpides, Folker Meyer and Rick Stevens

    Citation: Standards in Genomic Sciences 2011 5:5020243

    Content type: OriginalPaper

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  11. The Computational Modeling in Biology Network (COMBINE), is an initiative to coordinate the development of the various community standards and formats in computational systems biology and related fields. This rep...

    Authors: Nicolas Le Novère, Michael Hucka, Nadia Anwar, Gary D. Bader, Emek Demir, Stuart Moodie and Anatoly Sorokin

    Citation: Standards in Genomic Sciences 2011 5:5020230

    Content type: Report

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  12. Genotyping experiments are widely used in clinical and basic research laboratories to identify associations between genetic variations and normal/abnormal phenotypes. Genotyping assay techniques vary from sing...

    Authors: Jie Huang, Daniel Mirel, Elizabeth Pugh, Chao Xing, Peter N. Robinson, Alexander Pertsemlidis, LiangHao Ding, Julia Kozlitina, Joseph Maher, Jonathan Rios, Michael Story, Nishanth Marthandan and Richard H. Scheuermann

    Citation: Standards in Genomic Sciences 2011 5:5020224

    Content type: OriginalPaper

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  13. We present MINEMO (Minimal Information for Neural ElectroMagnetic Ontologies), a checklist for the description of event-related potentials (ERP) studies. MINEMO extends MINI (Minimal Information for Neuroscience ...

    Authors: Gwen Frishkoff, Jason Sydes, Kurt Mueller, Robert Frank, Tim Curran, John Connolly, Kerry Kilborn, Dennis Molfese, Charles Perfetti and Allen Malony

    Citation: Standards in Genomic Sciences 2011 5:5020211

    Content type: OriginalPaper

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  14. Both sequence-based and activity-based exploitation of environmental DNA have provided unprecedented access to the genomic content of cultivated and uncultivated microorganisms. Although researchers deposit mi...

    Authors: J. D. Neufeld, K. Engel, J. Cheng, G. Moreno-Hagelsieb, D. R. Rose and T. C. Charles

    Citation: Standards in Genomic Sciences 2011 5:5020203

    Content type: OriginalPaper

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  15. This report summarizes the proceedings of the 2nd Annual Argonne Soils Workshop held at Argonne National Laboratory October 6–8, 2010. The workshop assembled a diverse group of soil ecologists, microbiologists, m...

    Authors: Sarah L. O’Brien, Elizabeth M. Glass, Jennifer M. Brulc, Jack A. Gilbert, Dionysios A. Antonopoulos and Folker Meyer

    Citation: Standards in Genomic Sciences 2011 5:5020198

    Content type: Report

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  16. The promise of genome sequencing was that the vast undiscovered country would be mapped out by comparison of the multitude of sequences available and would aid researchers in deciphering the role of each gene ...

    Authors: William Klimke, Claire O’Donovan, Owen White, J. Rodney Brister, Karen Clark, Boris Fedorov, Ilene Mizrachi, Kim D. Pruitt and Tatiana Tatusova

    Citation: Standards in Genomic Sciences 2011 5:5010168

    Content type: OriginalPaper

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  17. The purpose of this table is to provide the community with a citable record of publications of ongoing genome sequencing projects that have led to a publication in the scientific literature. While our goal is ...

    Authors: Oranmiyan W. Nelson and George M. Garrity

    Citation: Standards in Genomic Sciences 2011 5:5010154

    Content type: Announcement

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  18. Mycobacterium sp.Spyr1 is a newly isolated strain that occurs in a creosote contaminated site in Greece. It was isolated by an enrichment method using pyrene as sole carbon and energy source and is capable of deg...

    Authors: Aristeidis Kallimanis, Eugenia Karabika, Kostantinos Mavromatis, Alla Lapidus, Kurt M. LaButti, Konstantinos Liolios, Natalia Ivanova, Lynne Goodwin, Tanja Woyke, Athanasios D. Velentzas, Angelos Perisynakis, Christos C. Ouzounis, Nikos C. Kyrpides, Anna I. Koukkou and Constantin Drainas

    Citation: Standards in Genomic Sciences 2011 5:5010144

    Content type: OriginalPaper

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  19. Caminibacter mediatlanticus strain TB-2T [1], is a thermophilic, anaerobic, chemolithoautotrophic bacterium, isolated from the walls of an active deep-sea hydrothermal vent chimney on the Mid-Atlantic Ridge and t...

    Authors: Donato Giovannelli, Steven Ferriera, Justin Johnson, Saul Kravitz, Ileana Pérez-Rodríguez, Jessica Ricci, Charles O’Brien, James W. Voordeckers, Elisabetta Bini and Costantino Vetriani

    Citation: Standards in Genomic Sciences 2011 5:5010135

    Content type: OriginalPaper

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  20. Bacillus tusciae Bonjour & Aragno 1994 is a hydrogen-oxidizing, thermoacidophilic spore former that lives as a facultative chemolithoautotroph in solfataras. Although 16S rRNA gene sequencing was well established...

    Authors: Hans-Peter Klenk, Alla Lapidus, Olga Chertkov, Alex Copeland, Tijana Glavina Del Rio, Matt Nolan, Susan Lucas, Feng Chen, Hope Tice, Jan-Fang Cheng, Cliff Han, David Bruce, Lynne Goodwin, Sam Pitluck, Amrita Pati, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 5:5010121

    Content type: OriginalPaper

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  21. Tolumonas auensis Fischer-Romero et al. 1996 is currently the only validly named species of the genus Tolumonas in the family Aeromonadaceae. The strain is of interest because of its ability to produce toluene fr...

    Authors: Olga Chertkov, Alex Copeland, Susan Lucas, Alla Lapidus, Kerrie W. Berry, John C. Detter, Tijana Glavina Del Rio, Nancy Hammon, Eileen Dalin, Hope Tice, Sam Pitluck, Paul Richardson, David Bruce, Lynne Goodwin, Cliff Han, Roxanne Tapia…

    Citation: Standards in Genomic Sciences 2011 5:5010112

    Content type: OriginalPaper

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  22. Ktedonobacter racemifer corrig. Cavaletti et al. 2007 is the type species of the genus Ktedonobacter, which in turn is the type genus of the family Ktedonobacteraceae, the type family of the order Ktedonobacteral...

    Authors: Yun-juan Chang, Miriam Land, Loren Hauser, Olga Chertkov, Tijana Glavina Del Rio, Matt Nolan, Alex Copeland, Hope Tice, Jan-Fang Cheng, Susan Lucas, Cliff Han, Lynne Goodwin, Sam Pitluck, Natalia Ivanova, Galina Ovchinikova, Amrita Pati…

    Citation: Standards in Genomic Sciences 2011 5:5010097

    Content type: OriginalPaper

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  23. Flexistipes sinusarabici Fiala et al. 2000 is the type species of the genus Flexistipes in the family Deferribacteraceae. The species is of interest because of its isolated phylogenetic location in a genomically ...

    Authors: Alla Lapidus, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 5:5010086

    Content type: OriginalPaper

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  24. In an effort to discover anaerobic bacteria capable of lignin degradation, we isolated “Enterobacter lignolyticus” SCF1 on minimal media with alkali lignin as the sole source of carbon. This organism was isolated...

    Authors: Kristen M. DeAngelis, Patrik D’Haeseleer, Dylan Chivian, Julian L. Fortney, Jane Khudyakov, Blake Simmons, Hannah Woo, Adam P. Arkin, Karen Walston Davenport, Lynne Goodwin, Amy Chen, Natalia Ivanova, Nikos C. Kyrpides, Konstantinos Mavromatis, Tanja Woyke and Terry C. Hazen

    Citation: Standards in Genomic Sciences 2011 5:5010069

    Content type: OriginalPaper

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  25. Haemophilus parasuis is a member of the family Pasteurellaceae and is the etiologic agent of Glässer’s disease in pigs, a systemic syndrome associated with only a subset of isolates. The genetic basis for virulen...

    Authors: Michael A. Mullins, Karen B. Register, Darrell O. Bayles, David W. Dyer, Joanna S. Kuehn and Gregory J. Phillips

    Citation: Standards in Genomic Sciences 2011 5:5010061

    Content type: OriginalPaper

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  26. Ferroglobus placidus belongs to the order Archaeoglobales within the archaeal phylum Euryarchaeota. Strain AEDII12DO is the type strain of the species and was isolated from a shallow marine hydrothermal system at...

    Authors: Iain Anderson, Carla Risso, Dawn Holmes, Susan Lucas, Alex Copeland, Alla Lapidus, Jan-Fang Cheng, David Bruce, Lynne Goodwin, Samuel Pitluck, Elizabeth Saunders, Thomas Brettin, John C. Detter, Cliff Han, Roxanne Tapia, Frank Larimer…

    Citation: Standards in Genomic Sciences 2011 5:5010050

    Content type: OriginalPaper

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  27. Prevotella multisaccharivorax Sakamoto et al. 2005 is a species of the large genus Prevotella, which belongs to the family Prevotellaceae. The species is of medical interest because its members are able to cause ...

    Authors: Amrita Pati, Sabine Gronow, Megan Lu, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 5:5010041

    Content type: OriginalPaper

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  28. Pedobacter saltans Steyn et al. 1998 is one of currently 32 species in the genus Pedobacter within the family Sphingobacteriaceae. The species is of interest for its isolated location in the tree of life. Like ot...

    Authors: Konstantinos Liolios, Johannes Sikorski, Meagan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Natalia Ivanova, Ioanna Pagani…

    Citation: Standards in Genomic Sciences 2011 5:5010030

    Content type: OriginalPaper

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  29. Fluviicola taffensis O’Sullivan et al. 2005 belongs to the monotypic genus Fluviicola within the family Cryomorphaceae. The species is of interest because of its isolated phylogenetic location in the genome-seque...

    Authors: Tanja Woyke, Olga Chertkov, Alla Lapidus, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann…

    Citation: Standards in Genomic Sciences 2011 5:5010021

    Content type: OriginalPaper

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  30. Staphylothermus hellenicus belongs to the order Desulfurococcales within the archaeal phylum Crenarchaeota. Strain P8T is the type strain of the species and was isolated from a shallow hydrothermal vent system at...

    Authors: Iain Anderson, Reinhard Wirth, Susan Lucas, Alex Copeland, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Samuel Pitluck, Karen Davenport, John C. Detter, Cliff Han, Roxanne Tapia, Miriam Land, Loren Hauser, Amrita Pati, Natalia Mikhailova…

    Citation: Standards in Genomic Sciences 2011 5:5010012

    Content type: OriginalPaper

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  31. The Coccolithoviridae is a recently discovered group of viruses that infect the marine coccolithophorid Emiliania huxleyi. Emiliania huxleyi virus 84 (EhV-84) has a 160–180 nm diameter icosahedral structure and a...

    Authors: Jozef I. Nissimov, Charlotte A. Worthy, Paul Rooks, Johnathan A. Napier, Susan A. Kimmance, Matthew R. Henn, Hiroyuki Ogata and Michael J. Allen

    Citation: Standards in Genomic Sciences 2011 5:5010001

    Content type: OriginalPaper

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  32. In the past few years, the field of metagenomics has been growing at an accelerated pace, particularly in response to advancements in new sequencing technologies. The large volume of sequence data from novel o...

    Authors: Hernan A. Lorenzi, Jeff Hoover, Jason Inman, Todd Safford, Sean Murphy, Leonid Kagan and Shannon J. Williamson

    Citation: Standards in Genomic Sciences 2011 4:4030418

    Content type: OriginalPaper

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  33. Desulfobacca acetoxidans Elferink et al. 1999 is the type species of the genus Desulfobacca, which belongs to the family Syntrophaceae in the class Deltaproteobacteria. The species was first observed in a study o...

    Authors: Markus Göker, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani…

    Citation: Standards in Genomic Sciences 2011 4:4030393

    Content type: OriginalPaper

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  34. Pyrolobus fumarii Blöchl et al. 1997 is the type species of the genus Pyrolobus, which belongs to the crenarchaeal family Pyrodictiaceae. The species is a facultatively microaerophilic non-motile crenarchaeon. It...

    Authors: Iain Anderson, Markus Göker, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4030381

    Content type: OriginalPaper

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  35. Syntrophobotulus glycolicus Friedrich et al. 1996 is currently the only member of the genus Syntrophobotulus within the family Peptococcaceae. The species is of interest because of its isolated phylogenetic locat...

    Authors: Cliff Han, Romano Mwirichia, Olga Chertkov, Brittany Held, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4030371

    Content type: OriginalPaper

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  36. Treponema succinifaciens Cwyk and Canale-Parola 1981 is of interest because this strictly anaerobic, apathogenic member of the genus Treponema oxidizes carbohydrates and couples the Embden-Meyerhof pathway via ac...

    Authors: Cliff Han, Sabine Gronow, Hazuki Teshima, Alla Lapidus, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Ahmed Zeytun, Roxanne Tapia, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4030361

    Content type: OriginalPaper

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  37. Haliscomenobacter hydrossis van Veen et al. 1973 is the type species of the genus Haliscomenobacter, which belongs to order “Sphingobacteriales”. The species is of interest because of its isolated phylogenetic lo...

    Authors: Hajnalka Daligault, Alla Lapidus, Ahmet Zeytun, Matt Nolan, Susan Lucas, Tijana Glavina Del Rio, Hope Tice, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann…

    Citation: Standards in Genomic Sciences 2011 4:4030352

    Content type: OriginalPaper

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  38. Tsukamurella paurometabola corrig. (Steinhaus 1941) Collins et al. 1988 is the type species of the genus Tsukamurella, which is the type genus to the family Tsukamurellaceae. The species is not only of interest b...

    Authors: A. Christine Munk, Alla Lapidus, Susan Lucas, Matt Nolan, Hope Tice, Jan-Fang Cheng, Tijana Glavina Del Rio, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Marcel Huntemann, Natalia Ivanova, Konstantinos Mavromatis, Natalia Mikhailova, Amrita Pati, Amy Chen…

    Citation: Standards in Genomic Sciences 2011 4:4030342

    Content type: OriginalPaper

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  39. Mahella australiensis Bonilla Salinas et al. 2004 is the type species of the genus Mahella, which belongs to the family Thermoanaerobacteraceae. The species is of interest because it differs from other known anae...

    Authors: Johannes Sikorski, Hazuki Teshima, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Marcel Huntemann, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Roxanne Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4030331

    Content type: OriginalPaper

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  40. Nitratifractor salsuginis Nakagawa et al. 2005 is the type species of the genus Nitratifractor, a member of the family Nautiliaceae. The species is of interest because of its high capacity for nitrate reduction v...

    Authors: Iain Anderson, Johannes Sikorski, Ahmet Zeytun, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova…

    Citation: Standards in Genomic Sciences 2011 4:4030322

    Content type: OriginalPaper

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  41. Halanaerobium praevalens Zeikus et al. 1984 is the type species of the genus Halanaerobium, which in turn is the type genus of the family Halanaerobiaceae. The species is of interest because it is able to reduce ...

    Authors: Natalia Ivanova, Johannes Sikorski, Olga Chertkov, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis…

    Citation: Standards in Genomic Sciences 2011 4:4030312

    Content type: OriginalPaper

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  42. Hippea maritima (Miroshnichenko et al. 1999) is the type species of the genus Hippea which belongs to the family Desulfurellaceae within the class Deltaproteobacteria. The anaerobic, moderately thermophilic marin...

    Authors: Marcel Huntemann, Megan Lu, Matt Nolan, Alla Lapidus, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Galina Ovchinikova…

    Citation: Standards in Genomic Sciences 2011 4:4030303

    Content type: OriginalPaper

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  43. Rhodospirillum rubrum (Esmarch 1887) Molisch 1907 is the type species of the genus Rhodospirillum, which is the type genus of the family Rhodospirillaceae in the class Alphaproteobacteria. The species is of speci...

    Authors: A. Christine Munk, Alex Copeland, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Kerrie Barry, John C. Detter, Nancy Hammon, Sanjay Israni, Sam Pitluck, Thomas Brettin, David Bruce, Cliff Han, Roxanne Tapia, Paul Gilna, Jeremy Schmutz…

    Citation: Standards in Genomic Sciences 2011 4:4030293

    Content type: OriginalPaper

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  44. The Institute for Genome Sciences (IGS) has developed a prokaryotic annotation pipeline that is used for coding gene/RNA prediction and functional annotation of Bacteria and Archaea. The fully automated pipeline ...

    Authors: Kevin Galens, Joshua Orvis, Sean Daugherty, Heather H. Creasy, Sam Angiuoli, Owen White, Jennifer Wortman, Anup Mahurkar and Michelle Gwinn Giglio

    Citation: Standards in Genomic Sciences 2011 4:4020244

    Content type: OriginalPaper

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  45. Bacteroides salanitronis Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. The species is of interest because it was isolated from the gut of a chicken and the gro...

    Authors: Sabine Gronow, Brittany Held, Susan Lucas, Alla Lapidus, Tijana Glavina Del Rio, Matt Nolan, Hope Tice, Shweta Deshpande, Jan-Fang Cheng, Sam Pitluck, Konstantinos Liolios, Ioanna Pagani, Natalia Ivanova, Konstantinos Mavromatis, Amrita Pati, Roxane Tapia…

    Citation: Standards in Genomic Sciences 2011 4:4020191

    Content type: OriginalPaper

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