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  1. Fervidobacterium islandicum AW-1 (KCTC 4680) is an extremely thermophilic anaerobe isolated from a hot spring in Indonesia. This bacterium could degrade native chicken feathers completely...

    Authors: Yong-Jik Lee, Haeyoung Jeong, Gun-Seok Park, Yunyoung Kwak, Sang-Jae Lee, Sang Jun Lee, Min-Kyu Park, Ji-Yeon Kim, Hwan Ku Kang, Jae-Ho Shin and Dong-Woo Lee
    Citation: Standards in Genomic Sciences 2015 10:71
  2. Species of Anoxybacillus are thermophiles and, therefore, their enzymes are suitable for many biotechnological applications. Anoxybacillus ayderensis AB04T (= NCIMB 13972T = NCCB 100050T) was isolated from the Ay...

    Authors: Ali Osman Belduz, Sabriye Canakci, Kok-Gan Chan, Ummirul Mukminin Kahar, Chia Sing Chan, Amira Suriaty Yaakop and Kian Mau Goh
    Citation: Standards in Genomic Sciences 2015 10:70
  3. Plant necrotrophic Dickeya spp. are among the top ten most devastating bacterial plant pathogens able to infect a number of different plant species worldwide including economically important crops. Little is know...

    Authors: Robert Czajkowski, Zofia Ozymko, Joanna Siwinska, Adam Ossowicki, Victor de Jager, Magdalena Narajczyk and Ewa Łojkowska
    Citation: Standards in Genomic Sciences 2015 10:68
  4. ‘Treponema phagedenis’ is considered to be a key agent in the pathogenesis of bovine digital dermatitis, an infectious foot condition of economic and animal welfare importance. We hereby ...

    Authors: Mamoona Mushtaq, Shahid Manzoor, Märit Pringle, Anna Rosander and Erik Bongcam-Rudloff
    Citation: Standards in Genomic Sciences 2015 10:67
  5. Flavihumibacter solisilvae 3-3T (= KACC 17917T = JCM 19891T) represents a type strain of the genus Flavihumibacter within the family Chitinophagaceae. This strain can use various sole car...

    Authors: Gang Zhou, Chong Chen, Che Ok Jeon, Gejiao Wang and Mingshun Li
    Citation: Standards in Genomic Sciences 2015 10:66
  6. Knowledge of the diversity and ecological function of the microbial consortia of James River in Virginia, USA, is essential to developing a more complete understanding of the ecology of this model river system...

    Authors: Bonnie L. Brown, Rebecca V. LePrell, Rima B. Franklin, Maria C. Rivera, Francine M. Cabral, Hugh L. Eaves, Vicki Gardiakos, Kevin P. Keegan and Timothy L. King
    Citation: Standards in Genomic Sciences 2015 10:65
  7. Burkholderia dilworthii strain WSM3556T is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective N2-fixing root nodule of Lebeckia ambigua collected...

    Authors: Sofie E. De Meyer, Rui Tian, Rekha Seshadri, Natalia Ivanova, Amrita Pati, Victor Markowitz, Tanja Woyke, Ron Yates, John Howieson, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:64
  8. Clostridium ihumii strain AP5T sp. nov. is a new species within the genus Clostridium. This strain, whose genome is described here, was isolated from the stool sample of a 21-year-old Fre...

    Authors: Vicky Merhej, Anne Pfleiderer, Dhamodharan Ramasamy, Jean-Christophe Lagier, Caroline Michelle, Didier Raoult and Pierre-Edouard Fournier
    Citation: Standards in Genomic Sciences 2015 10:63
  9. Bacillus thuringiensis is the most widely used biological pesticide in the world. It belongs to the Bacillus cereus sensu lato group, which contains six species. Among these six species,

    Authors: Qiao Li, Li Z. Xu, Ting Zou, Peng Ai, Gang H. Huang, Ping Li and Ai P. Zheng
    Citation: Standards in Genomic Sciences 2015 10:62
  10. The actinobacterium Rhodococcus sp. JG-3 is an aerobic, eurypsychrophilic, soil bacterium isolated from permafrost in the hyper arid Upper Dry Valleys of Antarctica. It is yellow pigmented, gram positive, moderat...

    Authors: Jacqueline Goordial, Isabelle Raymond-Bouchard, Jennifer Ronholm, Nicole Shapiro, Tanja Woyke, Lyle Whyte and Corien Bakermans
    Citation: Standards in Genomic Sciences 2015 10:61
  11. Vibrio anguillarum causes a fatal hemorrhagic septicemia in marine fish that leads to great economical losses in aquaculture world-wide. Vibrio anguillarum strain NB10 serotype O1 is a Gr...

    Authors: Kåre Olav Holm, Kristina Nilsson, Erik Hjerde, Nils-Peder Willassen and Debra L. Milton
    Citation: Standards in Genomic Sciences 2015 10:60
  12. Streptomyces sp. TP-A0598, isolated from seawater, produces lydicamycin, structurally unique type I polyketide bearing two nitrogen-containing five-membered rings, and four congeners TPU-...

    Authors: Hisayuki Komaki, Natsuko Ichikawa, Akira Hosoyama, Nobuyuki Fujita and Yasuhiro Igarashi
    Citation: Standards in Genomic Sciences 2015 10:58
  13. Methanosarcina species are the most metabolically versatile of the methanogenic Archaea and can obtain energy for growth by producing methane via the hydrogenotrophic, acetoclastic or met...

    Authors: Suzanne C. Lambie, William J. Kelly, Sinead C. Leahy, Dong Li, Kerri Reilly, Tim A. McAllister, Edith R. Valle, Graeme T. Attwood and Eric Altermann
    Citation: Standards in Genomic Sciences 2015 10:57
  14. The tenacious association between strains of the heterotrophic alphaproteobacterial genus Acidiphilium and chemolithotrophic iron oxidizing bacteria has long been known. In this context the genome of the heterotr...

    Authors: Sophie R. Ullrich, Anja Poehlein, Sonja Voget, Michael Hoppert, Rolf Daniel, Andreas Leimbach, Judith S. Tischler, Michael Schlömann and Martin Mühling
    Citation: Standards in Genomic Sciences 2015 10:56
  15. Polycyclic aromatic hydrocarbons (PAH) are ubiquitous environmental pollutants and microbial biodegradation is an important means of remediation of PAH-contaminated soil. Delftia acidovorans Cs1-4 (formerly Delft...

    Authors: Ameesha R. Shetty, Vidya de Gannes, Chioma C. Obi, Susan Lucas, Alla Lapidus, Jan-Fang Cheng, Lynne A. Goodwin, Samuel Pitluck, Linda Peters, Natalia Mikhailova, Hazuki Teshima, Cliff Han, Roxanne Tapia, Miriam Land, Loren J. Hauser, Nikos Kyrpides…
    Citation: Standards in Genomic Sciences 2015 10:55
  16. Mesorhizobium loti strain CJ3Sym was isolated in 1998 following transfer of the integrative and conjugative element ICEMlSymR7A, also known as the R7A symbiosis island, in a laboratory ma...

    Authors: Wayne Reeve, John Sullivan, Clive Ronson, Rui Tian, Christine Munk, Cliff Han, T.B.K. Reddy, Rekha Seshadri, Tanja Woyke, Amrita Pati, Victor Markowitz, Natalia Ivanova and Nikos Kyrpides
    Citation: Standards in Genomic Sciences 2015 10:54
  17. An extremely halophilic archaeon, Haladaptatus cibarius D43T, was isolated from traditional Korean salt-rich fermented seafood. Strain D43T shows the highest 16S rRNA gene sequence similarity (98.7 %) with Halada...

    Authors: Hae-Won Lee, Dae-Won Kim, Mi-Hwa Lee, Byung-Yong Kim, Yong-Joon Cho, Kyung June Yim, Hye Seon Song, Jin-Kyu Rhee, Myung-Ji Seo, Hak-Jong Choi, Jong-Soon Choi, Dong-Gi Lee, Changmann Yoon, Young-Do Nam and Seong Woon Roh
    Citation: Standards in Genomic Sciences 2015 10:53
  18. Members of the genus Halotalea (family Halomonadaceae) are of high significance since they can tolerate the greatest glucose and maltose concentrations ever reported for known bacteria and are involved in the deg...

    Authors: Spyridon Ntougias, Alla Lapidus, Alex Copeland, T. B. K. Reddy, Amrita Pati, Natalia N. Ivanova, Victor M. Markowitz, Hans-Peter Klenk, Tanja Woyke, Constantinos Fasseas, Nikos C. Kyrpides and Georgios I. Zervakis
    Citation: Standards in Genomic Sciences 2015 10:52
  19. Loktanella hongkongensis UST950701-009PT is a Gram-negative, non-motile and rod-shaped bacterium isolated from a marine biofilm in the subtropical seawater of Hong Kong. When growing as a...

    Authors: Stanley CK Lau, Thomas Riedel, Anne Fiebig, James Han, Marcel Huntemann, Jörn Petersen, Natalia N. Ivanova, Victor Markowitz, Tanja Woyke, Markus Göker, Nikos C. Kyrpides, Hans-Peter Klenk and Pei-Yuan Qian
    Citation: Standards in Genomic Sciences 2015 10:51
  20. Corynebacterium ulceribovis strain IMMIB L-1395T (= DSM 45146T) is an aerobic to facultative anaerobic, Gram-positive, non-spore-forming, non-motile rod-shaped bacterium that was isolated...

    Authors: Atteyet F. Yassin, Alla Lapidus, James Han, T.B.K. Reddy, Marcel Huntemann, Amrita Pati, Natalia Ivanova, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk and Nikos C. Kyrpides
    Citation: Standards in Genomic Sciences 2015 10:50
  21. Haloterrigena jeotgali is a halophilic archaeon within the family Natrialbaceae that was isolated from shrimp jeotgal, a traditional Korean salt-fermented food. A29T is the type strain of...

    Authors: In-Tae Cha, Mi-Hwa Lee, Byung-Yong Kim, Yong-Joon Cho, Dae-Won Kim, Kyung June Yim, Hye Seon Song, Myung-Ji Seo, Jin-Kyu Rhee, Jong-Soon Choi, Hak-Jong Choi, Changmann Yoon, Seong Woon Roh and Young-Do Nam
    Citation: Standards in Genomic Sciences 2015 10:49
  22. Bacteroides barnesiae Lan et al. 2006 is a species of the genus Bacteroides, which belongs to the family Bacteroidaceae. Strain BL2T is of interest because it was isolated from the gut of...

    Authors: Mitsuo Sakamoto, Alla L. Lapidus, James Han, Stephan Trong, Matthew Haynes, T. B. K. Reddy, Natalia Mikhailova, Marcel Huntemann, Amrita Pati, Natalia N. Ivanova, Rüdiger Pukall, Victor M. Markowitz, Tanja Woyke, Hans-Peter Klenk, Nikos C. Kyrpides and Moriya Ohkuma
    Citation: Standards in Genomic Sciences 2015 10:48
  23. Strain JCET was isolated from the fecal sample of a 24-year-old obese man living in Jeddah, Saudi Arabia. It is an aerobic, Gram-positive, rod-shaped bacterium. This strain exhibits a 16S rRNA nucleotide sequence...

    Authors: Fadi Bittar, Fehmida Bibi, Dhamodharan Ramasamy, Jean-Christophe Lagier, Esam I. Azhar, Asif A. Jiman-Fatani, Ahmed K. Al-Ghamdi, Ti Thien Nguyen, Muhammad Yasir, Pierre-Edouard Fournier and Didier Raoult
    Citation: Standards in Genomic Sciences 2015 10:47
  24. Flavobacterium rivuli Ali et al. 2009 emend. Dong et al. 2013 is one of about 100 species in the genus Flavobacterium (family Flavobacteriacae, phylum Bacteroidetes) with a validly publis...

    Authors: Richard L. Hahnke, Erko Stackebrandt, Jan P. Meier-Kolthoff, Brian J. Tindall, Sixing Huang, Manfred Rohde, Alla Lapidus, James Han, Stephan Trong, Matthew Haynes, T.B.K. Reddy, Marcel Huntemann, Amrita Pati, Natalia N. Ivanova, Konstantinos Mavromatis, Victor Markowitz…
    Citation: Standards in Genomic Sciences 2015 10:46
  25. In an effort to identify the best practice for finding genes in prokaryotic genomes and propose it as a standard for automated annotation pipelines, 1,004,576 peptides were collected from various publicly avai...

    Authors: H. James Tripp, Granger Sutton, Owen White, Jennifer Wortman, Amrita Pati, Natalia Mikhailova, Galina Ovchinnikova, Samuel H. Payne, Nikos C. Kyrpides and Natalia Ivanova
    Citation: Standards in Genomic Sciences 2015 10:45
  26. Rhizobium sullae strain WSM1592 is an aerobic, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen (N2) fixing root nodule formed on the short-lived perennia...

    Authors: Ron Yates, John Howieson, Sofie E. De Meyer, Rui Tian, Rekha Seshadri, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides, Angelo Loi, Brad Nutt, Giovanni Garau, Leonardo Sulas and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:44
  27. Shewanella algae strain C6G3, isolated from the 2 uppermost centimeters of muddy sediment of Arcachon Bay (SW Atlantic French coast, sampled in October 2007) has the capability to use a l...

    Authors: Axel Aigle, Valerie Michotey and Patricia Bonin
    Citation: Standards in Genomic Sciences 2015 10:43
  28. Strain FF4T was isolated from the skin flora of a 16-year-old healthy Senegalese female. This strain exhibited a 16S rRNA sequence similarity of 97.5 % with Bacillus fumarioli, the phylogenetically closest specie...

    Authors: Cheikh Ibrahima Lo, Roshan Padhmanabhan, Oleg Mediannikov, Jérôme Terras, Catherine Robert, Ngor Faye, Didier Raoult, Pierre-Edouard Fournier and Florence Fenollar
    Citation: Standards in Genomic Sciences 2015 10:41
  29. Clostridium sporogenes DSM 795 is the type strain of the species Clostridium sporogenes, first described by Metchnikoff in 1908. It is a Gram-positive, rod-shaped, anaerobic bacterium iso...

    Authors: Anja Poehlein, Karin Riegel, Sandra M König, Andreas Leimbach, Rolf Daniel and Peter Dürre
    Citation: Standards in Genomic Sciences 2015 10:40
  30. Methylibium sp. strain T29 was isolated from a gasoline-contaminated aquifer and proved to have excellent capabilities in degrading some common fuel oxygenates like methyl tert-butyl ethe...

    Authors: Zsolt Szabó, Péter Gyula, Hermina Robotka, Emese Bató, Bence Gálik, Péter Pach, Péter Pekker, Ildikó Papp and Zoltán Bihari
    Citation: Standards in Genomic Sciences 2015 10:39
  31. Paenirhodobacter enshiensis is a non-photosynthetic species that belongs to family Rhodobacteraceae. Here we report the draft genome sequence of Paenirhodobacter enshiensis DW2-9T and com...

    Authors: Dan Wang, Fengqiu Zhu, Xiaoli Zhu, Shixue Zheng, Rui Wang and Gejiao Wang
    Citation: Standards in Genomic Sciences 2015 10:38
  32. Here we report a summary classification and the features of five anaerobic oral bacteria from the family Peptostreptococcaceae. Bacterial strains were isolated from human subgingival plaque. Strains ACC19a, CM2, ...

    Authors: Maria V. Sizova, Amanda Chilaka, Ashlee M. Earl, Sebastian N. Doerfert, Paul A. Muller, Manolito Torralba, Jamison M. McCorrison, A. Scott Durkin, Karen E. Nelson and Slava S. Epstein
    Citation: Standards in Genomic Sciences 2015 10:37
  33. Rhizobium leguminosarum bv. viciae GB30 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Pisum sativum. GB30...

    Authors: Andrzej Mazur, Sofie E. De Meyer, Rui Tian, Jerzy Wielbo, Kamil Zebracki, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia N. Ivanova, Amrita Pati, Tanja Woyke, Nikos C. Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:36
  34. Six strains of Enterococcus faecalis (S1, S12, S17, S18, S19 and S32) were isolated from copper fed pigs in Denmark. These Gram-positive bacteria within the genus Enterococcus are able to survive a variety of phy...

    Authors: Siyu Zhang, Dan Wang, Yihua Wang, Henrik Hasman, Frank M. Aarestrup, Hend A. Alwathnani, Yong-Guan Zhu and Christopher Rensing
    Citation: Standards in Genomic Sciences 2015 10:35
  35. Ensifer meliloti 4H41 is an aerobic, motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of common bean (Phaseolus vulgaris). Strain 4H41...

    Authors: Ridha Mhamdi, Julie Ardley, Rui Tian, Rekha Seshadri, T.B.K. Reddy, Amrita Pati, Tanja Woyke, Victor Markowitz, Natalia Ivanova, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:34
  36. Bradyrhizobium sp. Ai1a-2 is is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen fixing root nodule of Andira inermis collected from Tres Pied...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed Baeshen, Nabih Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:33
  37. Burkholderia sp. strain UYPR1.413 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Parapiptadenia rigida collected at the Angico plantation, Man...

    Authors: Sofie E. De Meyer, Elena Fabiano, Rui Tian, Peter Van Berkum, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, John Howieson, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:31
  38. Salmonella arizonae (also called Salmonella subgroup IIIa) is a Gram-negative, non-spore-forming, motile, rod-shaped, facultatively anaerobic bacterium. S. arizonae strain RKS2983 was isolated fr...

    Authors: Chun-Xiao Wang, Song-Ling Zhu, Xiao-Yu Wang, Ye Feng, Bailiang Li, Yong-Guo Li, Randal N Johnston, Gui-Rong Liu, Jin Zhou and Shu-Lin Liu
    Citation: Standards in Genomic Sciences 2015 10:30
  39. Brachymonas chironomi strain AIMA4T (Halpern et al., 2009) is a Gram-negative, non-motile, aerobic, chemoorganotroph bacterium. B. chironomi is a member of the Comamonadaceae, a family within the...

    Authors: Sivan Laviad, Alla Lapidus, James Han, Matthew Haynes, TBK Reddy, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Konstantinos Mavromatis, Elke Lang, Manfred Rohde, Victor Markowitz, Tanja Woyke, Hans-Peter Klenk, Nikos C Kyrpides and Malka Halpern
    Citation: Standards in Genomic Sciences 2015 10:29
  40. To date, genome sequences (complete or in draft form) from only six baeocytous cyanobacteria in four genera have been reported: Xenococcus, Chroococcidiopsis, Pleurocapsa, and Stanieria. To expand our knowledge o...

    Authors: Chun-Hui Yu, Chung-Kuang Lu, Huang-Ming Su, Tzen-Yuh Chiang, Chi-Chuan Hwang, Tsunglin Liu and Yi-Min Chen
    Citation: Standards in Genomic Sciences 2015 10:28
  41. Bradyrhizobiumsp. Tv2a.2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Tachigali versicolor collected in Barro Col...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed N Baeshen, Nabih A Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:27
  42. The Genomic Encyclopedia of Bacteria and Archaea (GEBA) project was launched by the JGI in 2007 as a pilot project to sequence about 250 bacterial and archaeal genomes of elevated phylogenetic diversity. Herein, ...

    Authors: William B Whitman, Tanja Woyke, Hans-Peter Klenk, Yuguang Zhou, Timothy G Lilburn, Brian J Beck, Paul De Vos, Peter Vandamme, Jonathan A Eisen, George Garrity, Philip Hugenholtz and Nikos C Kyrpides
    Citation: Standards in Genomic Sciences 2015 10:26
  43. This report describes the outcomes of a recent workshop, building on a series of workshops from the last three years with the goal if integrating genomics and biodiversity research, with a more specific goal h...

    Authors: John Deck, Robert Guralnick, Ramona Walls, Stanley Blum, Melissa Haendel, Andréa Matsunaga and John Wieczorek
    Citation: Standards in Genomic Sciences 2015 10:25
  44. Bradyrhizobium sp. Th.b2 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from an effective nitrogen-fixing root nodule of Amphicarpaea bracteata collected in Johnson...

    Authors: Rui Tian, Matthew Parker, Rekha Seshadri, TBK Reddy, Victor Markowitz, Natalia Ivanova, Amrita Pati, Tanja Woyke, Mohammed N Baeshen, Nabih A Baeshen, Nikos Kyrpides and Wayne Reeve
    Citation: Standards in Genomic Sciences 2015 10:24
  45. Klebsiella variicola strain DX120E (=CGMCC 1.14935) is an endophytic nitrogen-fixing bacterium isolated from sugarcane crops grown in Guangxi, China and promotes sugarcane growth. Here we summari...

    Authors: Li Lin, Chunyan Wei, Mingyue Chen, Hongcheng Wang, Yuanyuan Li, Yangrui Li, Litao Yang and Qianli An
    Citation: Standards in Genomic Sciences 2015 10:22
  46. Leucobacter chironomi strain MM2LBT (Halpern et al., Int J Syst Evol Microbiol 59:665-70 2009) is a Gram-positive, rod shaped, non-motile, aerobic, chemoorganotroph bacterium. L. chironom...

    Authors: Sivan Laviad, Alla Lapidus, Alex Copeland, TBK Reddy, Marcel Huntemann, Amrita Pati, Natalia N Ivanova, Victor M Markowitz, Rüdiger Pukall, Hans-Peter Klenk, Tanja Woyke, Nikos C Kyrpides and Malka Halpern
    Citation: Standards in Genomic Sciences 2015 10:21